9P4I | pdb_00009p4i

YsxC-GTP treated 44.5SYsxC particles. Class 5.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyTranslational proteins 8106720 3000811 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L4 8106726 3001146 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyRibosomal protein L13 8106736 3001134 SCOP2B (2022-06-29)
H [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8106722 3000433 SCOP2B (2022-06-29)
I [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8106744 3001045 SCOP2B (2022-06-29)
J [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8106734 3000995 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyTranslational machinery components 8106908 3000571 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106764 3000334 SCOP2B (2022-06-29)
M [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8106756 3000563 SCOP2B (2022-06-29)
N [auth R]SCOP2B Superfamilyl21p-like 8106766 3002005 SCOP2B (2022-06-29)
O [auth S]SCOP2B SuperfamilyRibosomal protein L22 8106910 3001078 SCOP2B (2022-06-29)
P [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8106728 3000210 SCOP2B (2022-06-29)
Q [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106906 3000334 SCOP2B (2022-06-29)
R [auth V]SCOP2B SuperfamilyRibosomal L27 protein-like 8106752 3000539 SCOP2B (2022-06-29)
S [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8106920 3000713 SCOP2B (2022-06-29)
T [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8106914 3001378 SCOP2B (2022-06-29)
U [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins 8106808 3001320 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
G [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
I [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
J [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
K [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
L [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
M [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
O [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
P [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Q [auth U]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
Q [auth U]PF00467KOW motif (KOW)KOW motif- Family
S [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
T [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S rRNA---
5S rRNA---
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
F [auth G]50S ribosomal protein L6
G [auth J]50S ribosomal protein L13
H [auth K]50S ribosomal protein L14
I [auth L]50S ribosomal protein L15
J [auth N]50S ribosomal protein L17
K [auth O]50S ribosomal protein L18
L [auth P]50S ribosomal protein L19
M [auth Q]50S ribosomal protein L20
N [auth R]50S ribosomal protein L21
O [auth S]50S ribosomal protein L22
P [auth T]50S ribosomal protein L23
Q [auth U]50S ribosomal protein L24
R [auth V]50S ribosomal protein L27
S [auth Y]50S ribosomal protein L29
T [auth Z]50S ribosomal protein L30
U [auth b]50S ribosomal protein L32
V [auth d]50S ribosomal protein L34
W [auth f]Large ribosomal subunit protein bL36

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
F [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
F [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
F [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
F [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
G [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth J]IPR005822Large ribosomal subunit protein uL13Family
G [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
G [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth K]IPR000218Large ribosomal subunit protein uL14Family
H [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
H [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
I [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth L]IPR030878Large ribosomal subunit protein uL15Family
I [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
I [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
J [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
J [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
J [auth N]IPR000456Large ribosomal subunit protein bL17Family
K [auth O]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
K [auth O]IPR057268Large ribosomal subunit protein uL18Family
K [auth O]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
L [auth P]IPR001857Large ribosomal subunit protein bL19Family
L [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
L [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
L [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
M [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
M [auth Q]IPR005813Large ribosomal subunit protein bL20Family
N [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
N [auth R]IPR001787Large ribosomal subunit protein bL21Family
N [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
N [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
O [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth S]IPR001063Large ribosomal subunit protein uL22Family
O [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
O [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
P [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
P [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
P [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
Q [auth U]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
Q [auth U]IPR003256Large ribosomal subunit protein uL24Family
Q [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Q [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth U]IPR005824KOWDomain
Q [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
R [auth V]IPR001684Large ribosomal subunit protein bL27Family
R [auth V]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
S [auth Y]IPR050063Universal ribosomal protein uL29Family
S [auth Y]IPR001854Large ribosomal subunit protein uL29Family
S [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
S [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
T [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
T [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
T [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
T [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
U [auth b]IPR002677Large ribosomal subunit protein bL32Family
U [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth b]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
V [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
V [auth d]IPR000271Large ribosomal subunit protein bL34Family
W [auth f]IPR000473Large ribosomal subunit protein bL36Family
W [auth f]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily