9P3X | pdb_00009p3x

Structure of the ANDV dimer of tetramer at conformation I


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF20682Hantavirus glycoprotein Gc, C-terminal (Hanta_Gc_C)Hantavirus glycoprotein Gc, C-terminalThe medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [1,2] Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor. Gn and Gc forms homotetramers at the surface of the virion, w ...The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [1,2] Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor. Gn and Gc forms homotetramers at the surface of the virion, which attach the virion to host cell receptors including integrin beta3/ITGB3 and induce internalisation, predominantly through clathrin-dependent endocytosis [3,4]. This protein has a typical class II fusion protein fold consisting of a central beta-sandwich domain (termed domain I) made of eight beta-strands arranged in two antiparallel beta-sheets; domain II which has an elongated shape with two subdomains (a central, opened beta-barrel proximal to domain I and a distal beta-sandwich 'tip') and the C-terminal domain III, represented in this entry, which has a Ig-like fold [1,2].
Domain
PF20679Hantavirus glycoprotein Gn, base (Hanta_Gn-B)Hantavirus glycoprotein Gn, baseThe medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins, Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor [1,2,3,4]. Gn and Gc forms homotetramers (spikes) at the surface of ...The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins, Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor [1,2,3,4]. Gn and Gc forms homotetramers (spikes) at the surface of the virion which attach the virion to host cell receptors including integrin beta3/ITGB3 and induce internalisation predominantly through clathrin-dependent endocytosis [1,2]. This entry represents the C-terminal region of the Gn ectodomain denoted as Gn base (Gn-B) which contributes the most to the intra-spike tetrameric contacts [4].
Domain
PF01567Hantavirus glycoprotein Gn, head (Hanta_Gn-H)Hantavirus glycoprotein Gn, headThe medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins, Gn and Gc (also known as G1 and G2, respectively), as a polyprotein precursor [1,2,3]. Gn and Gc forms homotetramers (spikes) at the surface of ...The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins, Gn and Gc (also known as G1 and G2, respectively), as a polyprotein precursor [1,2,3]. Gn and Gc forms homotetramers (spikes) at the surface of the virion which attach the virion to host cell receptors including integrin beta3/ITGB3 induce internalisation, predominantly through clathrin-dependent endocytosis [3,4]. This entry represents the N-terminal two-thirds of the Gn glycoprotein ectodomain, denoted as 'head' (Gn-H) [2] which interacts with Gc ectodomain. Release of Gn-H at acid pH induces a further conformational change of the Gc domain II tip which exposes non-polar side chains for insertion into the endosomal membrane [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Glycoprotein C
Glycoprotein N

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR048791Glycoprotein Gc, C-terminal, bunyaviralesDomain
IPR048790Glycoprotein Gn, base, hantavirusDomain
IPR002532Hantavirus glycoprotein Gc, N-terminal domainDomain
IPR012316ITAM motif, hantavirus typeDomain
IPR002534Hantavirus glycoprotein Gn, headDomain
IPR016402Envelope glycoprotein precursor, HantavirusFamily
IPR048791Glycoprotein Gc, C-terminal, bunyaviralesDomain
IPR048790Glycoprotein Gn, base, hantavirusDomain
IPR002532Hantavirus glycoprotein Gc, N-terminal domainDomain
IPR012316ITAM motif, hantavirus typeDomain
IPR002534Hantavirus glycoprotein Gn, headDomain
IPR016402Envelope glycoprotein precursor, HantavirusFamily