9P38 | pdb_00009p38

YsxC-GMPPNP treated 44.5SYsxC particles. Class 1.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8106756 3000563 SCOP2B (2022-06-29)
H [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106764 3000334 SCOP2B (2022-06-29)
G [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8106734 3000995 SCOP2B (2022-06-29)
F [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8106744 3001045 SCOP2B (2022-06-29)
E [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8106722 3000433 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRibosomal protein L13 8106736 3001134 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyRibosomal protein L4 8106726 3001146 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyTranslational proteins 8106720 3000811 SCOP2B (2022-06-29)
P [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8106920 3000713 SCOP2B (2022-06-29)
O [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins 8106808 3001320 SCOP2B (2022-06-29)
N [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8106914 3001378 SCOP2B (2022-06-29)
M [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106906 3000334 SCOP2B (2022-06-29)
L [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8106728 3000210 SCOP2B (2022-06-29)
K [auth S]SCOP2B SuperfamilyRibosomal protein L22 8106910 3001078 SCOP2B (2022-06-29)
J [auth R]SCOP2B Superfamilyl21p-like 8106766 3002005 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth Q]50S ribosomal protein L20
H [auth P]50S ribosomal protein L19
G [auth N]50S ribosomal protein L17
F [auth L]50S ribosomal protein L15
E [auth K]50S ribosomal protein L14
D [auth J]50S ribosomal protein L13
C [auth E]50S ribosomal protein L4
B [auth D]50S ribosomal protein L3
R [auth B]Probable GTP-binding protein EngB
Q [auth d]50S ribosomal protein L34
P [auth Y]50S ribosomal protein L29
O [auth b]50S ribosomal protein L32
N [auth Z]50S ribosomal protein L30
M [auth U]50S ribosomal protein L24
L [auth T]50S ribosomal protein L23
K [auth S]50S ribosomal protein L22
J [auth R]50S ribosomal protein L21
23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
I [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
I [auth Q]IPR005813Large ribosomal subunit protein bL20Family
H [auth P]IPR001857Large ribosomal subunit protein bL19Family
H [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
H [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
H [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
G [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
G [auth N]IPR000456Large ribosomal subunit protein bL17Family
F [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
F [auth L]IPR030878Large ribosomal subunit protein uL15Family
F [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
F [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
F [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
E [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
E [auth K]IPR000218Large ribosomal subunit protein uL14Family
E [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
E [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
D [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
D [auth J]IPR005822Large ribosomal subunit protein uL13Family
D [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
D [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
C [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth E]IPR002136Large ribosomal subunit protein uL4Family
C [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
B [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
B [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
B [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth D]IPR000597Large ribosomal subunit protein uL3Family
R [auth B]IPR005225Small GTP-binding domainDomain
R [auth B]IPR019987GTP-binding protein, ribosome biogenesis, YsxCFamily
R [auth B]IPR030393EngB-type guanine nucleotide-binding (G) domainDomain
R [auth B]IPR006073GTP binding domainDomain
R [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Q [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Q [auth d]IPR000271Large ribosomal subunit protein bL34Family
P [auth Y]IPR050063Universal ribosomal protein uL29Family
P [auth Y]IPR001854Large ribosomal subunit protein uL29Family
P [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
O [auth b]IPR002677Large ribosomal subunit protein bL32Family
O [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth b]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
N [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
N [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
N [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
N [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
M [auth U]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
M [auth U]IPR003256Large ribosomal subunit protein uL24Family
M [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
M [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth U]IPR005824KOWDomain
M [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
L [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
L [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
L [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
K [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
K [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
K [auth S]IPR001063Large ribosomal subunit protein uL22Family
K [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
K [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
J [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
J [auth R]IPR001787Large ribosomal subunit protein bL21Family
J [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
J [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site