9OWZ | pdb_00009owz

Structure of A. thaliana TBP bound to AG-P nicked DNA site

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], D [auth A], G, J, M, A [auth B], D [auth A], G, J, M, P	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP) (TBP)	Transcription factor TFIID (or TATA-binding protein, TBP)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], F, I, L, O, C [auth D], F, I, L, O, R	DNA (5'-D(PTPTPTPTPAPTPAPGP*C)-3')	-	-	-
B [auth C], E, H, K, N, B [auth C], E, H, K, N, Q	DNA (5'-D(GPCPTPAPTPAPAPAPAPGPCPGP*C)-3')	-	-	-
A [auth B], D [auth A], G, J, M, A [auth B], D [auth A], G, J, M, P	TATA-box-binding protein 1	DNA binding binding nucleic acid binding general transcription initiation factor activity RNA polymerase II general transcription initiation factor activity	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], D [auth A], G, J, M, A [auth B], D [auth A], G, J, M, P	IPR030491	TATA-box binding protein, conserved site	Conserved Site
A [auth B], D [auth A], G, J, M, A [auth B], D [auth A], G, J, M, P	IPR000814	TATA-box binding protein	Family
A [auth B], D [auth A], G, J, M, A [auth B], D [auth A], G, J, M, P	IPR012295	TBP domain superfamily	Homologous Superfamily
A [auth B], D [auth A], G, J, M, A [auth B], D [auth A], G, J, M, P	IPR033710	TATA-box binding protein, eukaryotic	Family