9OWI | pdb_00009owi

Structure of the A. thaliana TBP bound to TBP-AG nicked DNA site

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth L]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
J [auth L]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
H [auth J]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
H [auth J]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], J [auth L]	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP) (TBP)	Transcription factor TFIID (or TATA-binding protein, TBP)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], F [auth H]	DNA (5'-D(TPTPTPTPAPTPAPG)-3')	-	-	-
B [auth C], E [auth F]	DNA (5'-D(CPTPAPTPAPAPAPAPGPCPGPC)-3')	-	-	-
A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], J [auth L]	TATA-box-binding protein 1	DNA binding binding nucleic acid binding general transcription initiation factor activity RNA polymerase II general transcription initiation factor activity	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], J [auth L]	IPR030491	TATA-box binding protein, conserved site	Conserved Site
A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], J [auth L]	IPR000814	TATA-box binding protein	Family
A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], J [auth L]	IPR012295	TBP domain superfamily	Homologous Superfamily
A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], A [auth B], D [auth E], G [auth I], H [auth J], I [auth K], J [auth L]	IPR033710	TATA-box binding protein, eukaryotic	Family