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 9OM4 | pdb_00009om4

Cryo-EM structure of filament form Acidithiobacillus caldus (Aca) short prokaryotic argonautes, HNH-associated (SPARHA) with gRNA and tDNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N7tm_2e9om4N1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: 7tm_2ECOD (v295.2)
J7tm_2e9om4J1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: 7tm_2ECOD (v295.2)
F7tm_2e9om4F1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: 7tm_2ECOD (v295.2)
BGlycos_transf_2e9om4B1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Glycos_transf_2ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, H, L, P
DNA (5'-D(*AP*GP*AP*GP*CP*AP*CP*CP*GP*CP*AP*AP*CP*CP*AP*AP*AP*T)-3')---
C, G, K, O
RNA (5'-R(P*AP*UP*UP*UP*GP*GP*UP*UP*GP*CP*GP*GP*UP*GP*CP*UP*CP*U)-3')---
B, F, J, N
Prokaryotic argonaute MID-PIWI family protein - -
A, E, I, M
HNH endonuclease---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, F, J, N
IPR036397Ribonuclease H superfamilyHomologous Superfamily
B, F, J, N
IPR003165Piwi domainDomain
B, F, J, N
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily