C [auth AC] PF07650 KH domain (KH_2) KH domain Domain C [auth AC] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain E [auth AE] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain F [auth AF] PF00900 Ribosomal family S4e (Ribosomal_S4e) Ribosomal family S4e - Family F [auth AF] PF08071 RS4NT (NUC023) domain (RS4NT) RS4NT (NUC023) domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain G [auth AG] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain Domain G [auth AG] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain H [auth AI] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain I [auth AJ] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 Domain J [auth AK] PF01201 Ribosomal protein S8e (Ribosomal_S8e) Ribosomal protein S8e - Family K [auth AL] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family L [auth AN] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family M [auth AO] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain N [auth AP] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family P [auth AQ] PF08069 Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) Ribosomal S13/S15 N-terminal domain This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Domain P [auth AQ] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 Domain Q [auth AS] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 Domain R [auth AU] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 Domain T [auth AW] PF01282 Ribosomal protein S24e (Ribosomal_S24e) Ribosomal protein S24e - Family U [auth AX] PF01667 Ribosomal protein S27 (Ribosomal_S27e) Ribosomal protein S27 - Family V [auth AY] PF01200 Ribosomal protein S28e (Ribosomal_S28e) Ribosomal protein S28e Domain W [auth AH] PF01092 Ribosomal protein S6e (Ribosomal_S6e) Ribosomal protein S6e - Family X [auth AM] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain BA [auth BC] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain BA [auth BC] PF00181 Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) Ribosomal Proteins L2, RNA binding N-terminal domain Domain BA [auth BC] PF01907 Ribosomal protein L37e (Ribosomal_L37e) Ribosomal protein L37e - Family CA [auth BD] PF00832 Ribosomal L39 protein (Ribosomal_L39) Ribosomal L39 protein - Family CA [auth BD] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family DA [auth BE] PF01020 Ribosomal L40e family (Ribosomal_L40e) Ribosomal L40e family Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain DA [auth BE] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family EA [auth BF] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain EA [auth BF] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain FA [auth BG] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain GA [auth BH] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Less Domain HA [auth BI] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain JA [auth BK] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain KA [auth BL] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain LA [auth BM] PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family MA [auth BN] PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family NA [auth BO] PF17135 Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) Ribosomal protein 60S L18 and 50S L18e - Family RA [auth BS] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain SA [auth BT] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family TA [auth BU] PF16906 Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) Ribosomal proteins L26 eukaryotic, L24P archaeal - Family TA [auth BU] PF00467 KOW motif (KOW) KOW motif - Family UA [auth BV] PF01246 Ribosomal protein L24e (Ribosomal_L24e) Ribosomal protein L24e Domain VA [auth BW] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family WA [auth BX] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain YA [auth BZ] PF01198 Ribosomal protein L31e (Ribosomal_L31e) Ribosomal protein L31e - Family