Annotations: 9O04

CryoEM structure of the FBXO42-CCDC6-PP2Ac degradasome

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Fringe, CHGN	e9o04F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fringe, CHGN	ECOD (v295.2)
D	Fringe, CHGN	e9o04D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fringe, CHGN	ECOD (v295.2)
C	Fringe, CHGN	e9o04C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fringe, CHGN	ECOD (v295.2)
B	DUF2046	e9o04B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DUF2046	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D, E, I, J, K D, E, I, J, K, L, M, N	PF00149	Calcineurin-like phosphoesterase (Metallophos)	Calcineurin-like phosphoesterase	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ...	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or yeast MRE11 Swiss:P32829. The most conserved regions in this superfamily centre around the metal chelating residues.	Domain
C, G	PF13415	FBX42, beta-propeller domain (Beta-prop_FBX42)	FBX42, beta-propeller domain	-	Repeat
C, G	PF12937	F-box-like (F-box-like)	F-box-like	This is an F-box-like family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F, H	SKP1	-	-	-
D, E, I, J, K D, E, I, J, K, L, M, N	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cytoskeletal protein binding protein binding binding tau protein binding RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity RNA polymerase II CTD heptapeptide repeat modifying activity phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cytoskeletal protein binding protein binding binding tau protein binding RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat phosphatase activity RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity protein heterodimerization activity protein dimerization activity signaling receptor binding GABA receptor binding protein tyrosine phosphatase activity	protein dephosphorylation macromolecule modification dephosphorylation phosphate-containing compound metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of growth regulation of biological process biological regulation growth protein dephosphorylation macromolecule modification dephosphorylation phosphate-containing compound metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of growth regulation of biological process biological regulation growth cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication hippo signaling intracellular signal transduction regulation of intracellular signal transduction regulation of hippo signaling negative regulation of intracellular signal transduction negative regulation of hippo signaling regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction intracellular signaling cassette phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of epithelial to mesenchymal transition multicellular organismal process regulation of developmental process cellular developmental process regulation of cell differentiation mesenchyme development cell differentiation anatomical structure development negative regulation of cell differentiation regulation of multicellular organismal process developmental process negative regulation of developmental process animal organ development tissue development negative regulation of epithelial to mesenchymal transition epithelial to mesenchymal transition mesenchymal cell differentiation negative regulation of multicellular organismal process animal gross anatomical part developmental process cellular response to oscillatory fluid shear stress response to oscillatory fluid shear stress response to fluid shear stress cellular response to stress response to stress vascular endothelial cell response to oscillatory fluid shear stress vascular endothelial cell response to fluid shear stress cellular response to fluid shear stress cell cycle mitotic cell cycle catabolic process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II RNA surveillance RNA catabolic process transcription initiation at RNA polymerase II promoter RNA polymerase II transcription initiation surveillance nuclear RNA surveillance nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation nucleobase-containing compound catabolic process biosynthetic process nucleic acid catabolic process multicellular organismal-level homeostasis leukocyte homeostasis T cell homeostasis homeostatic process immune system process homeostasis of number of cells lymphocyte homeostasis transcription elongation by RNA polymerase II regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of transcription elongation by RNA polymerase II regulation of macromolecule metabolic process regulation of gene expression DNA-templated transcription elongation regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization microtubule cytoskeleton organization cellular component organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly microtubule polymerization or depolymerization protein-containing complex assembly cellular component organization or biogenesis protein polymerization protein-containing complex organization regulation of microtubule-based process microtubule polymerization regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of microtubule polymerization regulation of protein polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization cytoskeleton organization regulation of microtubule cytoskeleton organization positive regulation of cell communication positive regulation of response to biotic stimulus positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly response to biotic stimulus immune response-activating signaling pathway inflammasome-mediated signaling pathway positive regulation of immune response canonical inflammasome complex assembly regulation of immune system process positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus positive regulation of intracellular signal transduction positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway defense response to other organism regulation of pattern recognition receptor signaling pathway NLRP3 inflammasome complex assembly positive regulation of defense response activation of innate immune response regulation of immune response inflammatory response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms positive regulation of cellular component organization regulation of response to external stimulus intracellular receptor signaling pathway positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus positive regulation of protein-containing complex assembly positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress innate immune response response to external biotic stimulus positive regulation of cellular process positive regulation of innate immune response defense response positive regulation of cellular component biogenesis defense response to symbiont positive regulation of signaling response to metal ion response to chemical response to lead ion ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration negative regulation of small molecule metabolic process negative regulation of glycolytic process oxoacid metabolic process carbohydrate catabolic process organophosphate catabolic process carbohydrate derivative metabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process negative regulation of ATP metabolic process regulation of ATP metabolic process regulation of purine nucleotide catabolic process negative regulation of nucleotide metabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process pyridine-containing compound metabolic process small molecule metabolic process negative regulation of nucleobase-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process negative regulation of carbohydrate metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process regulation of carbohydrate catabolic process negative regulation of metabolic process negative regulation of purine nucleotide catabolic process purine nucleoside diphosphate metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process regulation of phosphorus metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration ATP metabolic process negative regulation of purine nucleotide metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process negative regulation of nucleotide catabolic process negative regulation of catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process negative regulation of phosphorus metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process negative regulation of glycolytic process through fructose-6-phosphate glycolytic process through fructose-6-phosphate snRNA metabolic process snRNA processing RNA processing regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle regulation of G1/S transition of mitotic cell cycle mitotic cell cycle process regulation of cell cycle G1/S transition of mitotic cell cycle cell cycle process mitotic cell cycle phase transition	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane extracellular exosome membrane-bounded organelle extracellular vesicle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle phosphatase complex protein-containing complex catalytic complex protein serine/threonine phosphatase complex cytoplasm cytosol integrator complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle chromatin chromosome FAR/SIP/STRIPAK complex mitochondrion protein phosphatase type 2A complex cell periphery plasma membrane chromosome, centromeric region chromosomal region membrane microdomain membrane raft INTAC complex synapse cell junction
C, G	F-box only protein 42	ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex
A, B	Coiled-coil domain-containing protein 6	structural constituent of cytoskeleton structural molecule activity identical protein binding protein binding binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E, I, J, K D, E, I, J, K, L, M, N	IPR047129	Serine/Threonine protein phosphatase PP2A-like	Family
D, E, I, J, K D, E, I, J, K, L, M, N	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
D, E, I, J, K D, E, I, J, K, L, M, N	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
D, E, I, J, K D, E, I, J, K, L, M, N	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Domain
C, G	IPR036047	F-box-like domain superfamily	Homologous Superfamily
C, G	IPR001810	F-box domain	Domain
C, G	IPR015915	Kelch-type beta-propeller	Homologous Superfamily
C, G	IPR052821	F-box only substrate-recognition component	Family
A, B	IPR019152	Protein of unknown function DUF2046	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D, E, I, J, K D, E, I, J, K, L, M, N	: P67775	asthma heart disease systemic lupus erythematosus adenoma astrocytic tumor coronary artery disease hereditary spastic paraplegia lymphoplasmacytic lymphoma osteosarcoma psoriasis tuberculosis allergic rhinitis atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma asthma heart disease systemic lupus erythematosus adenoma astrocytic tumor coronary artery disease hereditary spastic paraplegia lymphoplasmacytic lymphoma osteosarcoma psoriasis tuberculosis allergic rhinitis atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant glioma ovarian cancer subependymal giant cell astrocytoma breast cancer lung adenocarcinoma myocardial ischemia plasma cell myeloma
C, G	: Q6P3S6	non-alcoholic fatty liver disease osteosarcoma subependymal giant cell astrocytoma
A, B	: Q16204	adenoma cancer familial nonmedullary thyroid carcinoma medulloblastoma pancreatic ductal adenocarcinoma spina bifida tuberculosis atypical teratoid rhabdoid tumor diabetes mellitus glioblastoma myopathy pancreatic intraductal papillary-mucinous neoplasm Thyroid Cancer, Papillary breast cancer malignant mesothelioma adenoma cancer familial nonmedullary thyroid carcinoma medulloblastoma pancreatic ductal adenocarcinoma spina bifida tuberculosis atypical teratoid rhabdoid tumor diabetes mellitus glioblastoma myopathy pancreatic intraductal papillary-mucinous neoplasm Thyroid Cancer, Papillary breast cancer malignant mesothelioma ovarian cancer polycystic ovary syndrome thyroid gland papillary carcinoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
D, E, I, J, K D, E, I, J, K, L, M, N	MLL	Parent Component: LEU : AA0299 : L-leucine methyl ester MOD:00304