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 9NYE | pdb_00009nye

Cryo-EM structure of the glycosyltransferase GtrB in the apo state (octamer volume)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HDNA_ligase_A_Ne9nyeH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
GDNA_ligase_A_Ne9nyeG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
FDNA_ligase_A_Ne9nyeF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
EDNA_ligase_A_Ne9nyeE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
DDNA_ligase_A_Ne9nyeD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
CDNA_ligase_A_Ne9nyeC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
BDNA_ligase_A_Ne9nyeB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)
ADNA_ligase_A_Ne9nyeA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: DNA_ligase_A_NECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00535Glycosyl transferase family 2 (Glycos_transf_2)Glycosyl transferase family 2Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Glycosyltransferase sll0501- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR063169GtrB-like, C-terminal hairpinDomain
A, B, C, D, E
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
A, B, C, D, E
IPR050256Glycosyltransferase 2Family
A, B, C, D, E
IPR001173Glycosyltransferase 2-likeDomain