Annotations: 9NRX

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth X], H [auth Y], I [auth Z]	Single domain antibody (nanobody) V2B3	-	-	-
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	E2 envelope glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	E1 envelope glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle

Chains

Polymer

Molecular Function

Biological Process

Cellular Component

G [auth X],
H [auth Y],
I [auth Z]

Single domain antibody (nanobody) V2B3

AA [auth w],
C [auth J],
D [auth N],
F [auth Q],
L [auth j],

E2 envelope glycoprotein

viral process

fusion of virus membrane with host endosome membrane

membrane fusion involved in viral entry into host cell

biological process involved in interspecies interaction between organisms

symbiont entry into host cell

symbiont entry into host

viral life cycle

biological process involved in interaction with host

biological process involved in symbiotic interaction

virion attachment to host cell

adhesion of symbiont to host cell

adhesion of symbiont to host

proteolysis

metabolic process

host cell plasma membrane

host cellular component

cellular anatomical structure

host cell part

host cell membrane

other organism part

host intracellular part

host cell cytoplasm

host intracellular region

virion component

virion membrane

viral capsid

icosahedral viral capsid

T=4 icosahedral viral capsid

A [auth B],
B [auth G],
E [auth O],
J [auth b],
K [auth g],

E1 envelope glycoprotein

viral process

fusion of virus membrane with host endosome membrane

membrane fusion involved in viral entry into host cell

biological process involved in interspecies interaction between organisms

symbiont entry into host cell

symbiont entry into host

viral life cycle

biological process involved in interaction with host

biological process involved in symbiotic interaction

virion attachment to host cell

adhesion of symbiont to host cell

adhesion of symbiont to host

proteolysis

metabolic process

host cell plasma membrane

host cellular component

cellular anatomical structure

host cell part

host cell membrane

other organism part

host intracellular part

host cell cytoplasm

host intracellular region

virion component

virion membrane

viral capsid

icosahedral viral capsid

T=4 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR000936	Alphavirus E2 glycoprotein	Family
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR000930	Peptidase S3, togavirin	Domain
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR002548	Alphavirus E1 glycoprotein	Domain
AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], AA [auth w], C [auth J], D [auth N], F [auth Q], L [auth j], M [auth n], O [auth q], R [auth T], S [auth U], U [auth W], X [auth t], Y [auth u]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR000936	Alphavirus E2 glycoprotein	Family
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR000930	Peptidase S3, togavirin	Domain
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR002548	Alphavirus E1 glycoprotein	Domain
A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], A [auth B], B [auth G], E [auth O], J [auth b], K [auth g], N [auth o], P [auth R], Q [auth S], T [auth V], V [auth r], W [auth s], Z [auth v]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily

9NRX | pdb_00009nrx

Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 9NRX | pdb_00009nrx

Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

9NRX | pdb_00009nrx