9NR7 | pdb_00009nr7

The structure of GluA1/A4 LBD-TMD in Noelin-AMPAR complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, C
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
B, D
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
B, D
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
F, H
PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Glutamate receptor 1
B, D
Isoform 2 of Glutamate receptor 4
E, G
Auxiliary protein at A'/C'---
F, H
Voltage-dependent calcium channel gamma-2 subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, C
IPR001828Receptor, ligand binding regionDomain
A, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, C
IPR015683Ionotropic glutamate receptorFamily
B, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
B, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
B, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B, D
IPR015683Ionotropic glutamate receptorFamily
B, D
IPR001508Ionotropic glutamate receptor, metazoaFamily
B, D
IPR001828Receptor, ligand binding regionDomain
F, H
IPR051072Voltage-dependent calcium channel gamma subunitFamily
F, H
IPR004031PMP-22/EMP/MP20/ClaudinFamily
F, H
IPR005422Voltage-dependent calcium channel, gamma-2 subunitFamily
F, H
IPR008368Voltage-dependent calcium channel, gamma subunitFamily

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, F
MemProtMDAnnotated as membrane protein by MemProtMD