Annotations: 9NPY

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth U]	Cofilin_ADF	e9npyU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
H [auth T]	Cofilin_ADF	e9npyT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
G [auth S]	Cofilin_ADF	e9npyS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
F [auth R]	Cofilin_ADF	e9npyR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
E [auth Q]	Cofilin_ADF	e9npyQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
D [auth O]	Cofilin_ADF	e9npyO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
C [auth L]	Cofilin_ADF	e9npyL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
B [auth J]	Cofilin_ADF	e9npyJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
P [auth g]	Cofilin_ADF	e9npyg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
O [auth E]	Cofilin_ADF	e9npyE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
M [auth d]	Cofilin_ADF	e9npyd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
L [auth c]	Cofilin_ADF	e9npyc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
K [auth b]	Cofilin_ADF	e9npyb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
J [auth Y]	Cofilin_ADF	e9npyY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)
A [auth B]	Cofilin_ADF	e9npyB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Cofilin_ADF	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth U]	40S ribosomal protein uS10, RPS20	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytosolic ribosome cytoplasm cytosol
H [auth T]	40S ribosomal protein eS19, RPS19	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol membrane-bounded organelle nucleus intracellular membrane-bounded organelle
G [auth S]	40S ribosomal protein uS13, RPS18	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytosolic ribosome cytoplasm cytosol
F [auth R]	40S ribosomal protein eS17, RPS17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol
E [auth Q]	40S ribosomal protein uS9, RPS16	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process protein metabolic process translation protein biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
D [auth O]	40S ribosomal protein uS19, RPS15	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
C [auth L]	40S ribosomal protein eS12, RPS12	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
B [auth J]	40S ribosomal protein eS10, RPS10	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytoplasm cytosol
P [auth g]	RACK1	translation regulator activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	-	somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection
O [auth E]	40S ribosomal protein uS7, RPS5	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytosolic ribosome cytoplasm cytosol
N [auth i]	18S ribosomal RNA	-	-	-
M [auth d]	40S ribosomal protein uS14, RPS29	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol rough endoplasmic reticulum membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system
L [auth c]	40S ribosomal protein eS28, RPS28	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process maturation of SSU-rRNA metabolic process macromolecule metabolic process RNA processing rRNA metabolic process protein metabolic process translation protein biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
K [auth b]	40S ribosomal protein eS31, RPS27a	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
J [auth Y]	40S ribosomal protein eS25, RPS25	structural molecule activity structural constituent of ribosome	-	intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol
A [auth B]	40S ribosomal protein uS3, RPS3	DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity catalytic activity, acting on a nucleic acid DNA nuclease activity DNA endonuclease activity catalytic activity, acting on DNA nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity lyase activity catalytic activity carbon-oxygen lyase activity RNA binding binding nucleic acid binding DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity catalytic activity, acting on a nucleic acid DNA nuclease activity DNA endonuclease activity catalytic activity, acting on DNA nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity lyase activity catalytic activity carbon-oxygen lyase activity RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication cellular process apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen cytoskeleton spindle microtubule cytoskeleton cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth U]	IPR001848	Small ribosomal subunit protein uS10	Family
I [auth U]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
I [auth U]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
I [auth U]	IPR005729	Small ribosomal subunit protein uS10, eukaryotic/archaeal	Family
I [auth U]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
H [auth T]	IPR001266	Small ribosomal subunit protein eS19	Family
H [auth T]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
H [auth T]	IPR018277	Small ribosomal subunit protein eS19, conserved site	Conserved Site
H [auth T]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
G [auth S]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
G [auth S]	IPR001892	Small ribosomal subunit protein uS13	Family
G [auth S]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
G [auth S]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
F [auth R]	IPR036401	Small ribosomal subunit protein eS17 superfamily	Homologous Superfamily
F [auth R]	IPR001210	Small ribosomal subunit protein eS17	Family
F [auth R]	IPR018273	Small ribosomal subunit protein eS17, conserved site	Conserved Site
E [auth Q]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
E [auth Q]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth Q]	IPR000754	Small ribosomal subunit protein uS9	Family
E [auth Q]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
D [auth O]	IPR002222	Small ribosomal subunit protein uS19	Family
D [auth O]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
D [auth O]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
D [auth O]	IPR005713	Small ribosomal subunit protein uS19, eukaryota/archaea	Family
C [auth L]	IPR000530	Small ribosomal subunit protein eS12	Family
C [auth L]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
C [auth L]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
C [auth L]	IPR047860	Small ribosomal subunit protein eS12, conserved site	Conserved Site
B [auth J]	IPR037447	Small ribosomal subunit protein eS10	Family
B [auth J]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B [auth J]	IPR005326	Plectin/eS10, N-terminal	Domain
P [auth g]	IPR045223	Small ribosomal subunit protein RACK1-like	Family
P [auth g]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
P [auth g]	IPR001680	WD40 repeat	Repeat
P [auth g]	IPR019775	WD40 repeat, conserved site	Conserved Site
P [auth g]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
P [auth g]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
O [auth E]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
O [auth E]	IPR000235	Small ribosomal subunit protein uS7	Family
O [auth E]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
O [auth E]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
O [auth E]	IPR005716	Ribosomal protein uS7, eukaryotic/archaeal	Family
M [auth d]	IPR001209	Small ribosomal subunit protein uS14	Family
M [auth d]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
M [auth d]	IPR039744	Small ribosomal subunit protein uS14, eukaryotes/archaea	Family
M [auth d]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
L [auth c]	IPR028626	Ribosomal protein eS28 conserved site	Conserved Site
L [auth c]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
L [auth c]	IPR000289	Small ribosomal subunit protein eS28	Family
K [auth b]	IPR002906	Small ribosomal subunit protein eS31	Domain
K [auth b]	IPR019956	Ubiquitin domain	Domain
K [auth b]	IPR019954	Ubiquitin conserved site	Conserved Site
K [auth b]	IPR050158	Ubiquitin and ubiquitin-like	Family
K [auth b]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
K [auth b]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
K [auth b]	IPR000626	Ubiquitin-like domain	Domain
K [auth b]	IPR038582	Small ribosomal subunit protein eS31 eukaryotic superfamily	Homologous Superfamily
J [auth Y]	IPR004977	Small ribosomal subunit protein eS25	Family
J [auth Y]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth B]	IPR005703	Small ribosomal subunit protein uS3, eukaryota/archaeal	Family
A [auth B]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
A [auth B]	IPR057258	Small ribosomal subunit protein uS3	Family
A [auth B]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
A [auth B]	IPR004044	K Homology domain, type 2	Domain
A [auth B]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
A [auth B]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
A [auth B]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9NPY | pdb_00009npy

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage