9NN1 | pdb_00009nn1

Yeast V1-ATPase bound to Rtc5p


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth F]RVPe9nn1F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
N [auth D]RVPe9nn1D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
G [auth J]RVPe9nn1J1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
F [auth I]RVPe9nn1I1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
C [auth E]RVPe9nn1E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)
B [auth C]RVPe9nn1C1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth B],
N [auth D],
O [auth F]
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
M [auth B],
N [auth D],
O [auth F]
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
M [auth B],
N [auth D],
O [auth F]
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
L [auth R]PF07534TLDc domain (TLD)TLDc domainThis domain is predicted to be an enzyme [1] and is often found associated with Pfam:PF01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices [2]. Domain
K [auth N]PF01990ATP synthase (F/14-kDa) subunit (ATP-synt_F)ATP synthase (F/14-kDa) subunit- Family
J [auth M]PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
D [auth G],
F [auth I],
H [auth K]
PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
A,
B [auth C],
C [auth E]
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
A,
B [auth C],
C [auth E]
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
A,
B [auth C],
C [auth E]
PF16886ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit barrel-sandwich domainThis barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.
Domain
A,
B [auth C],
C [auth E]
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth B],
N [auth D],
O [auth F]
V-type proton ATPase subunit B
L [auth R]Restriction of telomere capping protein 5-
K [auth N]V-type proton ATPase subunit F
J [auth M]V-type proton ATPase subunit D
E [auth H],
G [auth J],
I [auth L]
Yeast V-ATPase subunit G---
D [auth G],
F [auth I],
H [auth K]
V-type proton ATPase subunit E
A,
B [auth C],
C [auth E]
H(+)-transporting two-sector ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth B],
N [auth D],
O [auth F]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
M [auth B],
N [auth D],
O [auth F]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
M [auth B],
N [auth D],
O [auth F]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
M [auth B],
N [auth D],
O [auth F]
IPR005723ATPase, V1 complex, subunit BFamily
M [auth B],
N [auth D],
O [auth F]
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
M [auth B],
N [auth D],
O [auth F]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
M [auth B],
N [auth D],
O [auth F]
IPR055190ATP synthase A/B type, C-terminal domainDomain
L [auth R]IPR006571TLDc domainDomain
K [auth N]IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
K [auth N]IPR005772ATPase, V1 complex, subunit F, eukaryoticFamily
K [auth N]IPR008218ATPase, V1 complex, subunit FFamily
J [auth M]IPR002699ATPase, V1 complex, subunit DFamily
D [auth G],
F [auth I],
H [auth K]
IPR038495V-type ATPase subunit E, C-terminal domain superfamilyHomologous Superfamily
D [auth G],
F [auth I],
H [auth K]
IPR002842V-type ATPase subunit EFamily
A,
B [auth C],
C [auth E]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A,
B [auth C],
C [auth E]
IPR022878V-type ATP synthase catalytic alpha chainFamily
A,
B [auth C],
C [auth E]
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A,
B [auth C],
C [auth E]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E]
IPR031686ATPsynthase alpha/beta subunit, barrel-sandwich domainDomain
A,
B [auth C],
C [auth E]
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A,
B [auth C],
C [auth E]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A,
B [auth C],
C [auth E]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A,
B [auth C],
C [auth E]
IPR055190ATP synthase A/B type, C-terminal domainDomain
A,
B [auth C],
C [auth E]
IPR005725ATPase, V1 complex, subunit AFamily
A,
B [auth C],
C [auth E]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily