9NJU | pdb_00009nju

Structure of native homodimer of D. discoideum polyketide synthase Pks16


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF13602Zinc-binding dehydrogenase (ADH_zinc_N_2)Zinc-binding dehydrogenaseDomain
A, B
PF02801Beta-ketoacyl synthase, C-terminal domain (Ketoacyl-synt_C)Beta-ketoacyl synthase, C-terminal domainThe structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Domain
A, B
PF21089Polyketide synthase dehydratase domain (PKS_DH_N)Polyketide synthase dehydratase domainThis domain is part of a dehydratase domain found in diverse PKS enzymes. This domain adopts a HotDog fold. Domain
A, B
PF08240Alcohol dehydrogenase GroES-like domain (ADH_N)Alcohol dehydrogenase GroES-like domainThis is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure [1-2]. Domain
A, B
PF00109Beta-ketoacyl synthase, N-terminal domain (ketoacyl-synt)Beta-ketoacyl synthase, N-terminal domainThe structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains m ...The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine [1].
Domain
A, B
PF16197Ketoacyl-synthetase C-terminal extension (KAsynt_C_assoc)Ketoacyl-synthetase C-terminal extension- Family
A, B
PF20922Anamorsin, N-terminal (Anamorsin_N)Anamorsin, N-terminalAnamorsin (also named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1), is the human homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis [1-3]. It is found in both ...Anamorsin (also named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1), is the human homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis [1-3]. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) [4]. Anamorsin is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis [5]. In addition, it mediates the anti-apoptotic effects of various cytokines [6]. This entry represents the N-terminal domain, which has a S-adenosylmethionine methyltransferase-like fold.
Domain
A, B
PF08659KR domain (KR)KR domain- Family
A, B
PF14765Polyketide synthase dehydratase N-terminal domain (PS-DH)Polyketide synthase dehydratase N-terminal domainThis entry represents the N-terminal HotDog domain of the dehydratase (DH) module of polyketide synthases [1]. Structural analysis shows these DH domains are double hotdogs in which the active site contains a histidine from the N-terminal hotdog and ...This entry represents the N-terminal HotDog domain of the dehydratase (DH) module of polyketide synthases [1]. Structural analysis shows these DH domains are double hotdogs in which the active site contains a histidine from the N-terminal hotdog and an aspartate from the C-terminal hotdog. Studies have uncovered that a substrate tunnel formed between the DH domains may be essential for loading substrates and unloading products [2].
Domain
A, B
PF00698Acyl transferase domain (Acyl_transf_1)Acyl transferase domainDomain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
A, B
IPR014031Beta-ketoacyl synthase, C-terminalDomain
A, B
IPR013154Alcohol dehydrogenase-like, N-terminalDomain
A, B
IPR049552Polyketide synthase, dehydratase domain, N-terminalDomain
A, B
IPR049900Polyketide synthase, dehydratase domainDomain
A, B
IPR049551Polyketide synthase, dehydratase domain, C-terminalDomain
A, B
IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
A, B
IPR020841Polyketide synthase, beta-ketoacyl synthase domainDomain
A, B
IPR036736ACP-like superfamilyHomologous Superfamily
A, B
IPR014043Acyl transferase domainDomain
A, B
IPR020843Enoylreductase domainDomain
A, B
IPR032821Polyketide synthase, C-terminal extensionDomain
A, B
IPR011032GroES-like superfamilyHomologous Superfamily
A, B
IPR009081Phosphopantetheine binding ACP domainDomain
A, B
IPR049011Anamorsin, N-terminal domain, metazoan-typeDomain
A, B
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A, B
IPR050444Polyketide synthaseFamily
A, B
IPR013968Polyketide synthase-like, ketoreductase domainDomain
A, B
IPR016039Thiolase-likeHomologous Superfamily
A, B
IPR001227Acyl transferase domain superfamilyHomologous Superfamily
A, B
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B
IPR018201Beta-ketoacyl synthase, active siteActive Site
A, B
IPR014030Beta-ketoacyl synthase-like, N-terminalDomain
A, B
IPR042104Polyketide synthase, dehydratase domain superfamilyHomologous Superfamily