9N88 | pdb_00009n88

PROTAC-induced IRE1 ternary complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth E]SCOP2B SuperfamilyProtein kinase-like (PK-like) 8089783 3000066 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089781 3002392 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089781 3002392 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8089783 3000066 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth E]
PF06479Ribonuclease 2-5A (Ribonuc_2-5A)Ribonuclease 2-5A- Family
A,
C [auth E]
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain
E [auth G],
F [auth C]
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domainDomain
B,
D [auth F]
PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1]. Domain
B,
D [auth F]
PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
C [auth E]
Serine/threonine-protein kinase/endoribonuclease IRE1
E [auth G],
F [auth C]
Elongin-C
G [auth D],
H
Elongin-B peptide
B,
D [auth F]
von Hippel-Lindau disease tumor suppressor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
C [auth E]
IPR018391Pyrrolo-quinoline quinone beta-propeller repeatRepeat
A,
C [auth E]
IPR038357KEN domain superfamilyHomologous Superfamily
A,
C [auth E]
IPR000719Protein kinase domainDomain
A,
C [auth E]
IPR045133Serine/threonine-protein kinase/endoribonuclease IRE1/2-likeFamily
A,
C [auth E]
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
A,
C [auth E]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A,
C [auth E]
IPR010513KEN domainDomain
A,
C [auth E]
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A,
C [auth E]
IPR008271Serine/threonine-protein kinase, active siteActive Site
E [auth G],
F [auth C]
IPR016073SKP1 component, POZ domainDomain
E [auth G],
F [auth C]
IPR001232S-phase kinase-associated protein 1-likeFamily
E [auth G],
F [auth C]
IPR039948Elongin-CFamily
E [auth G],
F [auth C]
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
G [auth D],
H
IPR000626Ubiquitin-like domainDomain
G [auth D],
H
IPR039049Elongin BFamily
G [auth D],
H
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
B,
D [auth F]
IPR037139von Hippel-Lindau disease tumour suppressor, alpha domain superfamilyHomologous Superfamily
B,
D [auth F]
IPR022772von Hippel-Lindau disease tumour suppressor, beta/alpha domainDomain
B,
D [auth F]
IPR024053von Hippel-Lindau disease tumour suppressor, beta domainDomain
B,
D [auth F]
IPR024048von Hippel-Lindau disease tumour suppressor, alpha domainDomain
B,
D [auth F]
IPR036208VHL superfamilyHomologous Superfamily
B,
D [auth F]
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A,
C [auth E]
PharosO75460
E [auth G],
F [auth C]
PharosQ15369
G [auth D],
H
PharosQ15370
B,
D [auth F]
PharosP40337