9N78 | pdb_00009n78

SSU processome maturation and disassembly, State L

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
G [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
F [auth L5]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
UA [auth SK]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
TA [auth SJ]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
PA [auth SF]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
OA [auth SE]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
NA [auth SD]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
MA [auth SC]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
IA [auth OH]SCOP2B SuperfamilyL30e-like 8096946 3001739 SCOP2B (2022-06-29)
DA [auth NM]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
BA [auth NG]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
AA [auth NF]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
AA [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
O [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
M [auth LE]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
L [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
L [auth LD]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
K [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
H [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
G [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
F [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
FB [auth SY]PF03998Utp11 protein (Utp11)Utp11 protein- Family
EB [auth SW]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
EB [auth SW]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
CB [auth SU]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
BB [auth ST]PF04147Nop14-like family (Nop14)Nop14-like family- Family
E [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth L4]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
E [auth L4]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth L4]PF00467KOW motif (KOW)KOW motif- Family
ZA [auth SR]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
XA [auth SP]PF20416U3 small nucleolar RNA-associated protein 20 domain (UTP20)U3 small nucleolar RNA-associated protein 20 domain- Repeat
XA [auth SP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
WA [auth SM]PF04427Brix domain (Brix)Brix domainDomain
VA [auth SL]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
TA [auth SJ],
UA [auth SK]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
SA [auth SI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
SA [auth SI]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
RA [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
RA [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
QA [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
OA [auth SE],
PA [auth SF]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
D [auth L3]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
MA [auth SC],
NA [auth SD]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
LA [auth SB]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
LA [auth SB]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
KA [auth SA]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
KA [auth SA]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
JA [auth OU]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
IA [auth OH]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FA [auth NQ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
EA [auth NP]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
DA [auth NM]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
BA [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
AA [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
Z [auth ND]PF08297U3 snoRNA associated (U3_snoRNA_assoc)U3 snoRNA associated- Family
Y [auth NB]PF04000Sas10/Utp3/C1D family (Sas10_Utp3)Sas10/Utp3/C1D family- Family
X [auth NA]PF04006Mpp10 protein (Mpp10)Mpp10 protein- Family
W [auth LS]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
V [auth LN]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
U [auth LM]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
T [auth LL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
R [auth LJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
P [auth LH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
N [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
M [auth LE]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
L [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
L [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
K [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
J [auth L9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth L8]40S ribosomal protein S8-A
H [auth L7]40S ribosomal protein S7-A
G [auth L6]40S ribosomal protein S6-A
F [auth L5]40S ribosomal protein S5
GB [auth SZ]Essential nuclear protein 1
FB [auth SY]U3 small nucleolar RNA-associated protein 11-
EB [auth SW]Pre-rRNA-processing protein PNO1
DB [auth SV]Regulator of rDNA transcription protein 14- -
CB [auth SU]Nucleolar complex protein 4-
BB [auth ST]Nucleolar complex protein 14
AB [auth SS]U3 small nucleolar RNA-associated protein 14
E [auth L4]40S ribosomal protein S4-A
ZA [auth SR]40S ribosomal protein S23-A
YA [auth SQ]rRNA-processing protein FCF2-
XA [auth SP]U3 small nucleolar RNA-associated protein 20
WA [auth SM]U3 small nucleolar ribonucleoprotein protein IMP4
VA [auth SL]rRNA-processing protein FCF1
TA [auth SJ],
UA [auth SK]		Ribosomal RNA small subunit methyltransferase NEP1
SA [auth SI]Ribosome biogenesis protein BMS1
RA [auth SH]RNA 3'-terminal phosphate cyclase-like protein
QA [auth SG]Ribosomal RNA-processing protein 9
OA [auth SE],
PA [auth SF]		13 kDa ribonucleoprotein-associated protein
D [auth L3]40S ribosomal protein S18-A
MA [auth SC],
NA [auth SD]		rRNA 2'-O-methyltransferase fibrillarin
LA [auth SB]Nucleolar protein 58
KA [auth SA]Nucleolar protein 56
JA [auth OU]Ubiquitin-40S ribosomal protein S31
IA [auth OH]40S ribosomal protein S12
HA [auth NV]Exosome complex exonuclease RRP6
GA [auth NS]Probable ATP-dependent RNA helicase DHR1
FA [auth NQ]40S ribosomal protein S27-A
EA [auth NP]40S ribosomal protein S19-A
DA [auth NM]Small ribosomal subunit protein eS1A
C [auth L2]U3 snoRNA---
CA [auth NL]Dimethyladenosine transferase
BA [auth NG]40S ribosomal protein S14-A
AA [auth NF]40S ribosomal protein S13
Z [auth ND]Bud site selection protein 21
Y [auth NB]Something about silencing protein 10
X [auth NA]U3 small nucleolar RNA-associated protein MPP10
W [auth LS]U3 small nucleolar RNA-associated protein 18-
V [auth LN]U3 small nucleolar RNA-associated protein 4-
U [auth LM]U3 small nucleolar RNA-associated protein 10
T [auth LL]U3 small nucleolar RNA-associated protein 5-
B [auth L1]18S rRNA---
S [auth LK]U3 small nucleolar RNA-associated protein 9
R [auth LJ]U3 small nucleolar RNA-associated protein 15
Q [auth LI]U3 small nucleolar RNA-associated protein 8
P [auth LH]NET1-associated nuclear protein 1
O [auth LG]40S ribosomal protein S28-A
N [auth LF]40S ribosomal protein S24-A
M [auth LE]40S ribosomal protein S22-A
L [auth LD]40S ribosomal protein S11-A
K [auth LC]40S ribosomal protein S16-A
J [auth L9]40S ribosomal protein S9-A
A [auth L0]5'ETS rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth L8]IPR001047Small ribosomal subunit protein eS8Family
I [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
I [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
H [auth L7]IPR000554Small ribosomal subunit protein eS7Family
H [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
G [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth L6]IPR001377Small ribosomal subunit protein eS6Family
G [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
F [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth L5]IPR000235Small ribosomal subunit protein uS7Family
F [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
GB [auth SZ]IPR007955BystinFamily
FB [auth SY]IPR007144Small-subunit processome, Utp11Family
EB [auth SW]IPR041174KRR1 small subunit processome component, first KH domainDomain
EB [auth SW]IPR055212PNO1, first type I KH domainDomain
EB [auth SW]IPR055211PNO1, second type I KH domainDomain
EB [auth SW]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
DB [auth SV]IPR031404Regulator of rDNA transcription 14Family
CB [auth SU]IPR027193Nucleolar complex protein 4Family
CB [auth SU]IPR005612CCAAT-binding factorDomain
BB [auth ST]IPR007276Nucleolar protein 14Family
AB [auth SS]IPR006709Small-subunit processome, Utp14Family
E [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth L4]IPR002942RNA-binding S4 domainDomain
E [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth L4]IPR000876Small ribosomal subunit protein eS4Family
E [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth L4]IPR005824KOWDomain
ZA [auth SR]IPR006032Small ribosomal subunit protein uS12Family
ZA [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
ZA [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
YA [auth SQ]IPR039883Fcf2/DNTTIP2Family
YA [auth SQ]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
XA [auth SP]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
XA [auth SP]IPR016024Armadillo-type foldHomologous Superfamily
XA [auth SP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
XA [auth SP]IPR011989Armadillo-like helicalHomologous Superfamily
XA [auth SP]IPR052575Small subunit processome component 20Family
WA [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
WA [auth SM]IPR007109Brix domainDomain
VA [auth SL]IPR002716PIN domainDomain
VA [auth SL]IPR006984Fcf1/UTP23Family
VA [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
VA [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
TA [auth SJ],
UA [auth SK]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
TA [auth SJ],
UA [auth SK]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
TA [auth SJ],
UA [auth SK]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
SA [auth SI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
SA [auth SI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
SA [auth SI]IPR003959ATPase, AAA-type, coreDomain
SA [auth SI]IPR012948AARP2CNDomain
SA [auth SI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
SA [auth SI]IPR030387Bms1/Tsr1-type G domainDomain
SA [auth SI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
RA [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
RA [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
RA [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
RA [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
RA [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
RA [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
RA [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
RA [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
QA [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
QA [auth SG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
QA [auth SG]IPR001680WD40 repeatRepeat
QA [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth SE],
PA [auth SF]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
OA [auth SE],
PA [auth SF]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
OA [auth SE],
PA [auth SF]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
OA [auth SE],
PA [auth SF]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
OA [auth SE],
PA [auth SF]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
OA [auth SE],
PA [auth SF]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
D [auth L3]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
D [auth L3]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
D [auth L3]IPR001892Small ribosomal subunit protein uS13Family
D [auth L3]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
MA [auth SC],
NA [auth SD]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
MA [auth SC],
NA [auth SD]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
MA [auth SC],
NA [auth SD]		IPR020813Fibrillarin, conserved siteConserved Site
LA [auth SB]IPR042239Nop, C-terminal domainHomologous Superfamily
LA [auth SB]IPR012974Nucleolar protein 58/56, N-terminalDomain
LA [auth SB]IPR002687Nop domainDomain
LA [auth SB]IPR012976NOSICDomain
LA [auth SB]IPR036070Nop domain superfamilyHomologous Superfamily
LA [auth SB]IPR045056Nucleolar protein Nop56/Nop58Family
KA [auth SA]IPR042239Nop, C-terminal domainHomologous Superfamily
KA [auth SA]IPR012974Nucleolar protein 58/56, N-terminalDomain
KA [auth SA]IPR002687Nop domainDomain
KA [auth SA]IPR012976NOSICDomain
KA [auth SA]IPR036070Nop domain superfamilyHomologous Superfamily
KA [auth SA]IPR045056Nucleolar protein Nop56/Nop58Family
JA [auth OU]IPR019954Ubiquitin conserved siteConserved Site
JA [auth OU]IPR000626Ubiquitin-like domainDomain
JA [auth OU]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
JA [auth OU]IPR002906Small ribosomal subunit protein eS31Domain
JA [auth OU]IPR019956Ubiquitin domainDomain
JA [auth OU]IPR050158Ubiquitin and ubiquitin-likeFamily
JA [auth OU]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
JA [auth OU]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth OH]IPR000530Small ribosomal subunit protein eS12Family
IA [auth OH]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IA [auth OH]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
IA [auth OH]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth NV]IPR036397Ribonuclease H superfamilyHomologous Superfamily
HA [auth NV]IPR002121HRDC domainDomain
HA [auth NV]IPR012588Exosome-associated factor Rrp6, N-terminalDomain
HA [auth NV]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
HA [auth NV]IPR045092Exosome complex exonuclease Rrp6-likeFamily
HA [auth NV]IPR0025623'-5' exonuclease domainDomain
HA [auth NV]IPR049559Rrp6-like, 3'-5' exonuclease domainDomain
HA [auth NV]IPR010997HRDC-like superfamilyHomologous Superfamily
HA [auth NV]IPR044876HRDC domain superfamilyHomologous Superfamily
GA [auth NS]IPR011709DEAD-box helicase, OB foldDomain
GA [auth NS]IPR001650Helicase, C-terminal domain-likeDomain
GA [auth NS]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
GA [auth NS]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
GA [auth NS]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
GA [auth NS]IPR007502Helicase-associated domainDomain
GA [auth NS]IPR011545DEAD/DEAH-box helicase domainDomain
GA [auth NS]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FA [auth NQ]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
FA [auth NQ]IPR000592Small ribosomal subunit protein eS27Family
FA [auth NQ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth NP]IPR001266Small ribosomal subunit protein eS19Family
EA [auth NP]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
EA [auth NP]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
EA [auth NP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
DA [auth NM]IPR001593Small ribosomal subunit protein eS1Family
DA [auth NM]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
DA [auth NM]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
CA [auth NL]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
CA [auth NL]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CA [auth NL]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
CA [auth NL]IPR011530Ribosomal RNA adenine dimethylaseFamily
CA [auth NL]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
BA [auth NG]IPR001971Small ribosomal subunit protein uS11Family
BA [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
BA [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
AA [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
AA [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
AA [auth NF]IPR000589Small ribosomal subunit protein uS15Family
AA [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
Z [auth ND]IPR013268U3 small nucleolar RNA-associated protein 16Family
Y [auth NB]IPR018972Sas10 C-terminal domainDomain
Y [auth NB]IPR007146Sas10/Utp3/C1DFamily
X [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
W [auth LS]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
W [auth LS]IPR001680WD40 repeatRepeat
W [auth LS]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LS]IPR045161U3 small nucleolar RNA-associated protein 18Family
V [auth LN]IPR046351U3 small nucleolar RNA-associated protein 4Family
V [auth LN]IPR001680WD40 repeatRepeat
V [auth LN]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth LN]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth LM]IPR016024Armadillo-type foldHomologous Superfamily
U [auth LM]IPR040191U3 small nucleolar RNA-associated protein 10Family
U [auth LM]IPR021133HEAT, type 2Repeat
U [auth LM]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
U [auth LM]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth LM]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
U [auth LM]IPR012954BP28, C-terminal domainDomain
T [auth LL]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
T [auth LL]IPR007148Small-subunit processome, Utp12Domain
T [auth LL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
T [auth LL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth LK]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR019775WD40 repeat, conserved siteConserved Site
R [auth LJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR001680WD40 repeatRepeat
R [auth LJ]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
R [auth LJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth LI]IPR053881Utp8, C-terminalDomain
Q [auth LI]IPR018843Utp8, beta-propellerDomain
P [auth LH]IPR053826WD repeat-containing protein 75Family
P [auth LH]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
P [auth LH]IPR001680WD40 repeatRepeat
P [auth LH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
O [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
O [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth LG]IPR000289Small ribosomal subunit protein eS28Family
N [auth LF]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
N [auth LF]IPR001976Small ribosomal subunit protein eS24Family
N [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
M [auth LE]IPR000630Small ribosomal subunit protein uS8Family
M [auth LE]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
M [auth LE]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
L [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth LD]IPR000266Small ribosomal subunit protein uS17Family
L [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
K [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
K [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth LC]IPR000754Small ribosomal subunit protein uS9Family
K [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
J [auth L9]IPR002942RNA-binding S4 domainDomain
J [auth L9]IPR022801Small ribosomal subunit protein uS4Family
J [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
J [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily