9N76 | pdb_00009n76

SSU processome maturation and disassembly, State J

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
G [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
F [auth L5]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
BB [auth SJ]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
CB [auth SK]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
WA [auth SE]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
XA [auth SF]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
VA [auth SD]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
UA [auth SC]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
QA [auth OH]SCOP2B SuperfamilyL30e-like 8096946 3001739 SCOP2B (2022-06-29)
LA [auth NM]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
JA [auth NI]SCOP2B SuperfamilyRRP7 C-terminal domain-like 8053722 3002219 SCOP2B (2022-06-29)
JA [auth NI]SCOP2B SuperfamilyRNA-binding domain, RBD 8053724 3000110 SCOP2B (2022-06-29)
IA [auth NH]SCOP2B SuperfamilyNucleotidyltransferase-like 8053726 3000129 SCOP2B (2022-06-29)
IA [auth NH]SCOP2B SuperfamilyNucleotidyltransferase-like 8053725 3000129 SCOP2B (2022-06-29)
IA [auth NH]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053727 3000941 SCOP2B (2022-06-29)
IA [auth NH]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053728 3000941 SCOP2B (2022-06-29)
IA [auth NH]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053729 3001147 SCOP2B (2022-06-29)
IA [auth NH]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053730 3001147 SCOP2B (2022-06-29)
HA [auth NG]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
GA [auth NF]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
GA [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
Z [auth LR]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)
O [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
M [auth LE]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
L [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
L [auth LD]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
K [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
H [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
G [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
NB [auth SY]PF03998Utp11 protein (Utp11)Utp11 protein- Family
MB [auth SW]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
MB [auth SW]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
KB [auth SU]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
F [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
JB [auth ST]PF04147Nop14-like family (Nop14)Nop14-like family- Family
HB [auth SR]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
FB [auth SP]PF20416U3 small nucleolar RNA-associated protein 20 domain (UTP20)U3 small nucleolar RNA-associated protein 20 domain- Repeat
FB [auth SP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
EB [auth SM]PF04427Brix domain (Brix)Brix domainDomain
DB [auth SL]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
BB [auth SJ],
CB [auth SK]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
AB [auth SI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
AB [auth SI]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
ZA [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
ZA [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
E [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth L4]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
E [auth L4]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth L4]PF00467KOW motif (KOW)KOW motif- Family
YA [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
WA [auth SE],
XA [auth SF]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
UA [auth SC],
VA [auth SD]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
TA [auth SB]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
TA [auth SB]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
RA [auth OU]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
QA [auth OH]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
OA [auth NS]PF04408Helicase associated domain (HA2), winged-helix (WHD_HA2)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
OA [auth NS]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
OA [auth NS]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
OA [auth NS]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
NA [auth NQ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
D [auth L3]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
MA [auth NP]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
LA [auth NM]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
KA [auth NL]PF00398Ribosomal RNA adenine dimethylase (RrnaAD)Ribosomal RNA adenine dimethylaseDomain
JA [auth NI]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1]. Domain
JA [auth NI]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2]. Domain
IA [auth NH]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
IA [auth NH]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
IA [auth NH]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
IA [auth NH]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
IA [auth NH]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
IA [auth NH]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
HA [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
GA [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
FA [auth ND]PF08297U3 snoRNA associated (U3_snoRNA_assoc)U3 snoRNA associated- Family
EA [auth NB]PF04000Sas10/Utp3/C1D family (Sas10_Utp3)Sas10/Utp3/C1D family- Family
DA [auth NA]PF04006Mpp10 protein (Mpp10)Mpp10 protein- Family
CA [auth LZ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
BA [auth LT]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
BA [auth LT]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
AA [auth LS]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
Y [auth LQ]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
Y [auth LQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
X [auth LP]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
X [auth LP]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
W [auth LO]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
W [auth LO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
V [auth LN]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
U [auth LM]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
U [auth LM]PF23243HEATR1-like, HEAT repeats (HEAT_HEATR1)HEATR1-like, HEAT repeats- Repeat
U [auth LM]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
T [auth LL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
R [auth LJ]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
R [auth LJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
P [auth LH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
N [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
M [auth LE]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
L [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
L [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
J [auth L9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth L8]40S ribosomal protein S8-A
H [auth L7]40S ribosomal protein S7-A
G [auth L6]40S ribosomal protein S6-A
OB [auth SZ]Essential nuclear protein 1
NB [auth SY]U3 small nucleolar RNA-associated protein 11-
MB [auth SW]Pre-rRNA-processing protein PNO1
LB [auth SV]Regulator of rDNA transcription protein 14- -
KB [auth SU]Nucleolar complex protein 4-
F [auth L5]40S ribosomal protein S5
JB [auth ST]Nucleolar complex protein 14
IB [auth SS]U3 small nucleolar RNA-associated protein 14
HB [auth SR]40S ribosomal protein S23-A
GB [auth SQ]rRNA-processing protein FCF2-
FB [auth SP]U3 small nucleolar RNA-associated protein 20
EB [auth SM]U3 small nucleolar ribonucleoprotein protein IMP4
DB [auth SL]rRNA-processing protein FCF1
BB [auth SJ],
CB [auth SK]		Ribosomal RNA small subunit methyltransferase NEP1
AB [auth SI]Ribosome biogenesis protein BMS1
ZA [auth SH]RNA 3'-terminal phosphate cyclase-like protein
E [auth L4]40S ribosomal protein S4-A
YA [auth SG]Ribosomal RNA-processing protein 9
WA [auth SE],
XA [auth SF]		13 kDa ribonucleoprotein-associated protein
UA [auth SC],
VA [auth SD]		rRNA 2'-O-methyltransferase fibrillarin
TA [auth SB]Nucleolar protein 58
Nucleolar protein 56
RA [auth OU]Ubiquitin-40S ribosomal protein S31
QA [auth OH]40S ribosomal protein S12
PA [auth NV]Exosome complex exonuclease RRP6
OA [auth NS]Probable ATP-dependent RNA helicase DHR1
NA [auth NQ]40S ribosomal protein S27-A
D [auth L3]40S ribosomal protein S18-A
MA [auth NP]40S ribosomal protein S19-A
LA [auth NM]Small ribosomal subunit protein eS1A
KA [auth NL]Dimethyladenosine transferase
JA [auth NI]Ribosomal RNA-processing protein 7
IA [auth NH]U3 small nucleolar RNA-associated protein 22
HA [auth NG]40S ribosomal protein S14-A
GA [auth NF]40S ribosomal protein S13
FA [auth ND]Bud site selection protein 21
EA [auth NB]Something about silencing protein 10
DA [auth NA]U3 small nucleolar RNA-associated protein MPP10
C [auth L2]U3 snoRNA---
CA [auth LZ]U3 small nucleolar ribonucleoprotein protein IMP3
BA [auth LT]U3 small nucleolar RNA-associated protein 21-
AA [auth LS]U3 small nucleolar RNA-associated protein 18-
Z [auth LR]U3 small nucleolar RNA-associated protein 13
Y [auth LQ]U3 small nucleolar RNA-associated protein 12
X [auth LP]U3 small nucleolar RNA-associated protein 6
W [auth LO]Periodic tryptophan protein 2
V [auth LN]U3 small nucleolar RNA-associated protein 4-
U [auth LM]U3 small nucleolar RNA-associated protein 10
T [auth LL]U3 small nucleolar RNA-associated protein 5-
B [auth L1]18S rRNA---
S [auth LK]U3 small nucleolar RNA-associated protein 9
R [auth LJ]U3 small nucleolar RNA-associated protein 15
Q [auth LI]U3 small nucleolar RNA-associated protein 8
P [auth LH]NET1-associated nuclear protein 1
O [auth LG]40S ribosomal protein S28-A
N [auth LF]40S ribosomal protein S24-A
M [auth LE]40S ribosomal protein S22-A
L [auth LD]40S ribosomal protein S11-A
K [auth LC]40S ribosomal protein S16-A
J [auth L9]40S ribosomal protein S9-A
A [auth L0]5'ETS rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth L8]IPR001047Small ribosomal subunit protein eS8Family
I [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
I [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
H [auth L7]IPR000554Small ribosomal subunit protein eS7Family
H [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
G [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth L6]IPR001377Small ribosomal subunit protein eS6Family
G [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
OB [auth SZ]IPR007955BystinFamily
NB [auth SY]IPR007144Small-subunit processome, Utp11Family
MB [auth SW]IPR041174KRR1 small subunit processome component, first KH domainDomain
MB [auth SW]IPR055212PNO1, first type I KH domainDomain
MB [auth SW]IPR055211PNO1, second type I KH domainDomain
MB [auth SW]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
LB [auth SV]IPR031404Regulator of rDNA transcription 14Family
KB [auth SU]IPR005612CCAAT-binding factorDomain
KB [auth SU]IPR027193Nucleolar complex protein 4-likeFamily
F [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth L5]IPR000235Small ribosomal subunit protein uS7Family
F [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
JB [auth ST]IPR007276Nucleolar protein 14Family
IB [auth SS]IPR006709Small-subunit processome, Utp14Family
HB [auth SR]IPR006032Small ribosomal subunit protein uS12Family
HB [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HB [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
GB [auth SQ]IPR039883Fcf2/DNTTIP2Family
GB [auth SQ]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
FB [auth SP]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
FB [auth SP]IPR016024Armadillo-type foldHomologous Superfamily
FB [auth SP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
FB [auth SP]IPR011989Armadillo-like helicalHomologous Superfamily
FB [auth SP]IPR057525U3 small nucleolar RNA-associated protein 20, C-terminalDomain
FB [auth SP]IPR052575Small subunit processome component 20Family
EB [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
EB [auth SM]IPR007109Brix domainDomain
DB [auth SL]IPR002716PIN domainDomain
DB [auth SL]IPR006984Fcf1/UTP23Family
DB [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
DB [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
BB [auth SJ],
CB [auth SK]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
BB [auth SJ],
CB [auth SK]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
BB [auth SJ],
CB [auth SK]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
AB [auth SI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
AB [auth SI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
AB [auth SI]IPR003959ATPase, AAA-type, coreDomain
AB [auth SI]IPR012948AARP2CNDomain
AB [auth SI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AB [auth SI]IPR030387Bms1/Tsr1-type G domainDomain
AB [auth SI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
ZA [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
ZA [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
ZA [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
ZA [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
ZA [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
ZA [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
ZA [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
ZA [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
E [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth L4]IPR002942RNA-binding S4 domainDomain
E [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth L4]IPR000876Small ribosomal subunit protein eS4Family
E [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth L4]IPR005824KOWDomain
YA [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
YA [auth SG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
YA [auth SG]IPR001680WD40 repeatRepeat
YA [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
WA [auth SE],
XA [auth SF]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
WA [auth SE],
XA [auth SF]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
WA [auth SE],
XA [auth SF]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
WA [auth SE],
XA [auth SF]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
WA [auth SE],
XA [auth SF]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
WA [auth SE],
XA [auth SF]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
UA [auth SC],
VA [auth SD]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
UA [auth SC],
VA [auth SD]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
UA [auth SC],
VA [auth SD]		IPR020813Fibrillarin, conserved siteConserved Site
TA [auth SB]IPR042239Nop, C-terminal domainHomologous Superfamily
TA [auth SB]IPR012974Nucleolar protein 58/56, N-terminalDomain
TA [auth SB]IPR002687Nop domainDomain
TA [auth SB]IPR012976NOSICDomain
TA [auth SB]IPR036070Nop domain superfamilyHomologous Superfamily
TA [auth SB]IPR045056Nucleolar protein Nop56/Nop58Family
IPR042239Nop, C-terminal domainHomologous Superfamily
IPR012974Nucleolar protein 58/56, N-terminalDomain
IPR002687Nop domainDomain
IPR012976NOSICDomain
IPR036070Nop domain superfamilyHomologous Superfamily
IPR045056Nucleolar protein Nop56/Nop58Family
RA [auth OU]IPR019954Ubiquitin conserved siteConserved Site
RA [auth OU]IPR000626Ubiquitin-like domainDomain
RA [auth OU]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
RA [auth OU]IPR002906Small ribosomal subunit protein eS31Domain
RA [auth OU]IPR019956Ubiquitin domainDomain
RA [auth OU]IPR050158Ubiquitin and ubiquitin-likeFamily
RA [auth OU]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
RA [auth OU]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth OH]IPR000530Small ribosomal subunit protein eS12Family
QA [auth OH]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
QA [auth OH]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
QA [auth OH]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
PA [auth NV]IPR036397Ribonuclease H superfamilyHomologous Superfamily
PA [auth NV]IPR002121HRDC domainDomain
PA [auth NV]IPR012588Exosome-associated factor Rrp6, N-terminalDomain
PA [auth NV]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
PA [auth NV]IPR045092Exosome complex exonuclease Rrp6-likeFamily
PA [auth NV]IPR0025623'-5' exonuclease domainDomain
PA [auth NV]IPR049559Rrp6-like, 3'-5' exonuclease domainDomain
PA [auth NV]IPR010997HRDC-like superfamilyHomologous Superfamily
PA [auth NV]IPR044876HRDC domain superfamilyHomologous Superfamily
OA [auth NS]IPR011709DEAD-box helicase, OB foldDomain
OA [auth NS]IPR001650Helicase, C-terminal domain-likeDomain
OA [auth NS]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
OA [auth NS]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
OA [auth NS]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
OA [auth NS]IPR007502Helicase-associated domainDomain
OA [auth NS]IPR011545DEAD/DEAH-box helicase domainDomain
OA [auth NS]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth NQ]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
NA [auth NQ]IPR000592Small ribosomal subunit protein eS27Family
NA [auth NQ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth L3]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
D [auth L3]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
D [auth L3]IPR001892Small ribosomal subunit protein uS13Family
D [auth L3]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
MA [auth NP]IPR001266Small ribosomal subunit protein eS19Family
MA [auth NP]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
MA [auth NP]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
MA [auth NP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LA [auth NM]IPR001593Small ribosomal subunit protein eS1Family
LA [auth NM]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
LA [auth NM]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
KA [auth NL]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
KA [auth NL]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
KA [auth NL]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
KA [auth NL]IPR011530Ribosomal RNA adenine dimethylaseFamily
KA [auth NL]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
JA [auth NI]IPR040446Ribosomal RNA-processing protein 7Family
JA [auth NI]IPR040447Rrp7, RRM-like N-terminal domainDomain
JA [auth NI]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
IA [auth NH]IPR035367Nrap protein, domain 2Domain
IA [auth NH]IPR035368Nrap protein, domain 3Domain
IA [auth NH]IPR035370Nrap protein, domain 5Domain
IA [auth NH]IPR005554NOL6/Upt22Family
IA [auth NH]IPR035369Nrap protein, domain 4Domain
IA [auth NH]IPR035082Nrap protein domain 1Domain
IA [auth NH]IPR035371Nrap protein, domain 6Domain
HA [auth NG]IPR001971Small ribosomal subunit protein uS11Family
HA [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
HA [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
GA [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
GA [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
GA [auth NF]IPR000589Small ribosomal subunit protein uS15Family
GA [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
FA [auth ND]IPR013268U3 small nucleolar RNA-associated protein 16Family
EA [auth NB]IPR018972Sas10 C-terminal domainDomain
EA [auth NB]IPR007146Sas10/Utp3/C1DFamily
DA [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
CA [auth LZ]IPR002942RNA-binding S4 domainDomain
CA [auth LZ]IPR022801Small ribosomal subunit protein uS4Family
CA [auth LZ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
CA [auth LZ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
BA [auth LT]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth LT]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth LT]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
BA [auth LT]IPR001680WD40 repeatRepeat
BA [auth LT]IPR007319WDR36/Utp21, C-terminal domainDomain
BA [auth LT]IPR059157WDR36/Utp21, N-terminal domainDomain
BA [auth LT]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR001680WD40 repeatRepeat
AA [auth LS]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR045161U3 small nucleolar RNA-associated protein 18Family
Z [auth LR]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth LR]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
Z [auth LR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
Z [auth LR]IPR001680WD40 repeatRepeat
Z [auth LR]IPR057644WD repeat-containing protein 75, second beta-propellerDomain
Z [auth LR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth LQ]IPR019775WD40 repeat, conserved siteConserved Site
Y [auth LQ]IPR007148Small-subunit processome, Utp12Domain
Y [auth LQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth LQ]IPR051570TBC1 domain family involved in cilium biogenesisFamily
Y [auth LQ]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
Y [auth LQ]IPR001680WD40 repeatRepeat
Y [auth LQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
X [auth LP]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth LP]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
X [auth LP]IPR003107HAT (Half-A-TPR) repeatRepeat
X [auth LP]IPR013949U3 small nucleolar RNA-associated protein 6Family
W [auth LO]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
W [auth LO]IPR019775WD40 repeat, conserved siteConserved Site
W [auth LO]IPR007148Small-subunit processome, Utp12Domain
W [auth LO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
W [auth LO]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
W [auth LO]IPR001680WD40 repeatRepeat
W [auth LO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR027145Periodic tryptophan protein 2Family
V [auth LN]IPR046351U3 small nucleolar RNA-associated protein 4Family
V [auth LN]IPR001680WD40 repeatRepeat
V [auth LN]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth LN]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth LM]IPR016024Armadillo-type foldHomologous Superfamily
U [auth LM]IPR040191U3 small nucleolar RNA-associated protein 10Family
U [auth LM]IPR021133HEAT, type 2Repeat
U [auth LM]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
U [auth LM]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth LM]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
U [auth LM]IPR012954BP28, C-terminal domainDomain
T [auth LL]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
T [auth LL]IPR007148Small-subunit processome, Utp12Domain
T [auth LL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
T [auth LL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth LK]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR019775WD40 repeat, conserved siteConserved Site
R [auth LJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR001680WD40 repeatRepeat
R [auth LJ]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
R [auth LJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth LI]IPR053881Utp8, C-terminalDomain
Q [auth LI]IPR018843Utp8, beta-propellerDomain
P [auth LH]IPR053826WD repeat-containing protein 75Family
P [auth LH]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
P [auth LH]IPR001680WD40 repeatRepeat
P [auth LH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
O [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
O [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth LG]IPR000289Small ribosomal subunit protein eS28Family
N [auth LF]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
N [auth LF]IPR001976Small ribosomal subunit protein eS24Family
N [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
M [auth LE]IPR000630Small ribosomal subunit protein uS8Family
M [auth LE]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
M [auth LE]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
L [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth LD]IPR000266Small ribosomal subunit protein uS17Family
L [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
K [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
K [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth LC]IPR000754Small ribosomal subunit protein uS9Family
K [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
J [auth L9]IPR002942RNA-binding S4 domainDomain
J [auth L9]IPR022801Small ribosomal subunit protein uS4Family
J [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
J [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth L2]M7G
AA [auth LS]SEP Parent Component: SER

RESID:  AA0037

PSI-MOD :  O-phospho-L-serine MOD:00046