9MOV | pdb_00009mov

Cryo-EM structure of factor Va bound to activated protein C


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyTrypsin-like serine proteases 8042258 3000114 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGLA-domain 8041437 3001028 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEGF/Laminin-like 8038297 3000412 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEGF/Laminin-like 8038301 3000412 SCOP2B (2022-06-29)
BSCOP2B Superfamilygalactose-binding domain-like 8041135 3000087 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00089Trypsin (Trypsin)TrypsinDomain
PF14670Coagulation Factor Xa inhibitory site (FXa_inhibition)Coagulation Factor Xa inhibitory siteThis short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442 [1]. Domain
PF00594Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain (Gla)Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domainThis domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla). Domain
PF00754F5/8 type C domain (F5_F8_type_C)F5/8 type C domainThis domain is also known as the discoidin (DS) domain family [1]. Domain
PF07732Multicopper oxidase (Cu-oxidase_3)Multicopper oxidaseThis entry contains many divergent copper oxidase-like domains that are not recognised by the Pfam:PF00394 model. Domain
PF07732Multicopper oxidase (Cu-oxidase_3)Multicopper oxidaseThis entry contains many divergent copper oxidase-like domains that are not recognised by the Pfam:PF00394 model. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Vitamin K-dependent protein C heavy chain
Vitamin K-dependent protein C
Coagulation factor Va light chain
Coagulation factor Va heavy chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
IPR018097EGF-like calcium-binding, conserved siteConserved Site
IPR000742EGF-like domainDomain
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
IPR050442Peptidase S1 family, coagulation factorsFamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR017857Coagulation factor-like, Gla domain superfamilyHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
IPR001881EGF-like calcium-binding domainDomain
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
IPR012224Peptidase S1A, coagulation factor VII/IX/X/C/ZFamily
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
IPR018097EGF-like calcium-binding, conserved siteConserved Site
IPR000742EGF-like domainDomain
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
IPR050442Peptidase S1 family, coagulation factorsFamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR017857Coagulation factor-like, Gla domain superfamilyHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
IPR001881EGF-like calcium-binding domainDomain
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
IPR012224Peptidase S1A, coagulation factor VII/IX/X/C/ZFamily
IPR033138Multicopper oxidases, conserved siteConserved Site
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
IPR011707Multicopper oxidase-like, N-terminalDomain
IPR024715Coagulation factor 5/8-likeFamily
IPR000421Coagulation factor 5/8, C-terminal domainDomain
IPR008972CupredoxinHomologous Superfamily
IPR050633Neuropilin/Multicopper Oxidase/Coagulation FactorFamily
IPR033138Multicopper oxidases, conserved siteConserved Site
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
IPR011707Multicopper oxidase-like, N-terminalDomain
IPR024715Coagulation factor 5/8-likeFamily
IPR000421Coagulation factor 5/8, C-terminal domainDomain
IPR008972CupredoxinHomologous Superfamily
IPR050633Neuropilin/Multicopper Oxidase/Coagulation FactorFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP04070
PharosP04070
PharosP12259
PharosP12259

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
CGU Parent Component: GLU

RESIDAA0032

PSI-MOD :  L-gamma-carboxyglutamic acid MOD:00041