9MOF | pdb_00009mof

Structure of the bacteriophage T4 portal-neck-tail connector complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
W [auth AB]Beta-Caspe9mofAB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
VF [auth u]Beta-Caspe9mofu1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
UF [auth t]Beta-Caspe9moft1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
TF [auth s]Beta-Caspe9mofs1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
SF [auth r]Beta-Caspe9mofr1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
RF [auth q]Beta-Caspe9mofq1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
ZA [auth Ae]Beta-Caspe9mofAe1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
YA [auth Ad]Beta-Caspe9mofAd1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
XA [auth Ac]Beta-Caspe9mofAc1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
UB [auth Az]Beta-Caspe9mofAz1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
UA [auth AZ]Beta-Caspe9mofAZ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
U [auth A9]Beta-Caspe9mofA91 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
TB [auth Ay]Beta-Caspe9mofAy1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
T [auth A8]Beta-Caspe9mofA81 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
SA [auth AX]Beta-Caspe9mofAX1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
S [auth A7]Beta-Caspe9mofA71 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
RB [auth Aw]Beta-Caspe9mofAw1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
RA [auth AW]Beta-Caspe9mofAW1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
QA [auth AV]Beta-Caspe9mofAV1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
Q [auth A5]Beta-Caspe9mofA51 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
PC [auth BM]Beta-Caspe9mofBM1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
PB [auth Au]Beta-Caspe9mofAu1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
P [auth A4]Beta-Caspe9mofA41 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
NC [auth BK]Beta-Caspe9mofBK1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
MC [auth BJ]Beta-Caspe9mofBJ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
LC [auth BI]Beta-Caspe9mofBI1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
KB [auth Ap]Beta-Caspe9mofAp1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
IB [auth An]Beta-Caspe9mofAn1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
HB [auth Am]Beta-Caspe9mofAm1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
FB [auth Ak]Beta-Caspe9mofAk1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
EB [auth Aj]Beta-Caspe9mofAj1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
DB [auth Ai]Beta-Caspe9mofAi1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
CB [auth Ah]Beta-Caspe9mofAh1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
BB [auth Ag]Beta-Caspe9mofAg1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
AB [auth Af]Beta-Caspe9mofAf1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
SB [auth Ax]Beta-Caspe9mofAx1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
QB [auth Av]Beta-Caspe9mofAv1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
O [auth A3]Beta-Caspe9mofA31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
N [auth A2]Beta-Caspe9mofA21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
M [auth A1]Beta-Caspe9mofA11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
L [auth A0]Beta-Caspe9mofA01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
KC [auth BH]Beta-Caspe9mofBH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
JC [auth BG]Beta-Caspe9mofBG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
IC [auth BF]Beta-Caspe9mofBF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
GC [auth BD]Beta-Caspe9mofBD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
EC [auth BB]Beta-Caspe9mofBB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
DC [auth BA]Beta-Caspe9mofBA1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
Z [auth AE]Beta-Caspe9mofAE1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
V [auth AA]Beta-Caspe9mofAA1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
RD [auth Bo]Beta-Caspe9mofBo1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
QD [auth Bn]Beta-Caspe9mofBn1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
PF [auth o]Beta-Caspe9mofo1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
PD [auth Bm]Beta-Caspe9mofBm1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
OD [auth Bl]Beta-Caspe9mofBl1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
ND [auth Bk]Beta-Caspe9mofBk1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
MD [auth Bj]Beta-Caspe9mofBj1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
LD [auth Bi]Beta-Caspe9mofBi1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
KD [auth Bh]Beta-Caspe9mofBh1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
JD [auth Bg]Beta-Caspe9mofBg1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
J [auth 9]Beta-Caspe9mof91 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
ID [auth Bf]Beta-Caspe9mofBf1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
I [auth 8]Beta-Caspe9mof81 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
HD [auth Be]Beta-Caspe9mofBe1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
H [auth 7]Beta-Caspe9mof71 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
GD [auth Bd]Beta-Caspe9mofBd1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
FD [auth Bc]Beta-Caspe9mofBc1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
ED [auth Bb]Beta-Caspe9mofBb1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
EA [auth AJ]Beta-Caspe9mofAJ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
DD [auth Ba]Beta-Caspe9mofBa1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
DA [auth AI]Beta-Caspe9mofAI1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
CD [auth BZ]Beta-Caspe9mofBZ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
CA [auth AH]Beta-Caspe9mofAH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
BD [auth BY]Beta-Caspe9mofBY1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
BA [auth AG]Beta-Caspe9mofAG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
AD [auth BX]Beta-Caspe9mofBX1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)
AA [auth AF]Beta-Caspe9mofAF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Beta-CaspECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07068Major capsid protein Gp23 (Gp23)Major capsid protein Gp23- Family
PF07068Major capsid protein Gp23 (Gp23)Major capsid protein Gp23- Family
PF07068Major capsid protein Gp23 (Gp23)Major capsid protein Gp23- Family
PF07068Major capsid protein Gp23 (Gp23)Major capsid protein Gp23- Family
PF07068Major capsid protein Gp23 (Gp23)Major capsid protein Gp23- Family
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
PF07068Major capsid protein Gp23 (Gp23)Major capsid protein Gp23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
gp3, tube terminator protein - -
gp15, tail terminator protein- - -
gp13, neck protein- -
gp23, major capsid protein- -
gp20, portal protein-
gpwac, fibritin- -
gp19, tail tube protein - -
gp18, tail sheath protein-
Soc, small outer capsid protein- -
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
Hoc, highly immunogenic outer capsid protein- -
gp14, neck protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR031997Myoviridae tail sheath stabiliserFamily
IPR038553Myoviridae tail sheath stabiliser superfamilyHomologous Superfamily
IPR059555Bacteriophage T4 neck protein gp13Family
IPR010762Capsid protein, T4-like bacteriophage-likeFamily
IPR038997Major capsid protein, MyoviridaeFamily
IPR010823Portal protein Gp20Family
IPR012473Fibritin C-terminalDomain
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR052042Tail sheath structural proteinFamily
IPR054565Tail sheath protein Gp18-like, domain IDomain
IPR020287Tail sheath protein, C-terminal domainDomain
IPR054564Tail sheath protein Gp18-like, domain III N-terminal regionDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR035326Phage tail sheath protein-like, beta-sandwich domainDomain
IPR038151Small outer capsid protein superfamilyHomologous Superfamily
IPR031743Small outer capsid proteinFamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR038998Highly immunogenic outer capsid proteinFamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR035986PKD domain superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR013783Immunoglobulin-like foldHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR022409PKD/Chitinase domainDomain
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR000601PKD domainDomain
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR007110Immunoglobulin-like domainDomain
IPR021674Bacteriophage T4, Gp14, neck proteinFamily