9ME1 | pdb_00009me1

hCXCR4-CXCL12 complex with 1:1 stoichiometry


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth N]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
K [auth P]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
M [auth J]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
N [auth F]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
O [auth G]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
D [auth O]SCOP2B SuperfamilyInterleukin 8-like chemokines 8043051 3001955 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyG protein-coupled receptor-like 8091230 3000473 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00048Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)Small cytokines (intecrine/chemokine), interleukin-8 likeIncludes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. Domain
PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Stromal cell-derived factor 1
C-X-C chemokine receptor type 4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001811Chemokine interleukin-8-like domainDomain
IPR036048Chemokine interleukin-8-like superfamilyHomologous Superfamily
IPR039809Chemokine beta/gamma/deltaFamily
IPR033899CXC Chemokine domainDomain
IPR000355Chemokine receptor familyFamily
IPR022726CXC chemokine receptor 4 N-terminal domainDomain
IPR000276G protein-coupled receptor, rhodopsin-likeFamily
IPR017452GPCR, rhodopsin-like, 7TMDomain
IPR001277CXC chemokine receptor 4/atypical chemokine receptor 2Family
IPR050119C-C chemokine receptor type 1-9-likeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP48061
PharosP61073