Crystal structure of S. aureus protein A bound to a human single-domain antibody
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth B] | LSDAT_euk | e9m5dB1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: LSDAT_euk | ECOD (v295.2) |
| C [auth H] | FliD_C | e9m5dH1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: FliD_C | ECOD (v295.2) |
| B [auth A] | IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 | e9m5dA1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 | ECOD (v295.2) |
| A [auth D] | IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 | e9m5dD1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 | ECOD (v295.2) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| A [auth D], B [auth A] | Heavy Chain | IGHV3 | - | immunoglobulin g-binding protein a | SAbDab (2026-08-21) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth H], D [auth B] | IPR009063 | Immunoglobulin/albumin-binding domain superfamily | Homologous Superfamily |
| C [auth H], D [auth B] | IPR005877 | YSIRK Gram-positive signal peptide | Domain |
| C [auth H], D [auth B] | IPR036779 | LysM domain superfamily | Homologous Superfamily |
| C [auth H], D [auth B] | IPR005038 | Octapeptide repeat | Repeat |
| C [auth H], D [auth B] | IPR003132 | Protein A, Ig-binding domain | Domain |
| C [auth H], D [auth B] | IPR018392 | LysM domain | Domain |
| C [auth H], D [auth B] | IPR019931 | LPXTG cell wall anchor motif | Conserved Site |














