9M4S | pdb_00009m4s

crystal structure of Arabidopsis thaliana ING2 PHD finger in complex with an H3K4me3 peptide

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00628PHD-finger (PHD)PHD-fingerPHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PHD finger protein ING2 -
B [auth P]Histone H3.1 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR028651ING familyFamily
IPR001965Zinc finger, PHD-typeDomain
IPR019787Zinc finger, PHD-fingerDomain
IPR024610Inhibitor of growth protein, N-terminal histone-bindingDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
B [auth P]IPR009072Histone-foldHomologous Superfamily
B [auth P]IPR007125Core Histone H2A/H2B/H3 domainDomain
B [auth P]IPR000164Histone H3/CENP-AFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth P]M3L Parent Component: LYS

RESID:  AA0074

PSI-MOD :  N6,N6,N6-trimethyl-L-lysine MOD:00083