9M3J | pdb_00009m3j

structure of bundle-shaped PBS with both long rod and (ApcA2B3ApcD) trimer

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth B1]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
BA [auth N2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
D [auth D1]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
DC [auth P3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
E [auth F1]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
FA [auth R2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
FB [auth r2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
HC [auth T3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
JB [auth v2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
LC [auth X3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
NC [auth Z3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
P [auth B2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
RB [auth D3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
T [auth F2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
TC [auth f3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
V [auth H2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
VB [auth H3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
XA [auth j2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
XB [auth J3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
ZA [auth l2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
ZB [auth L3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
ZC [auth h3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
Z [auth L2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
X [auth J2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
VA [auth h2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
UC [auth g3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
TB [auth F3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
TA [auth f2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
RC [auth d3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
RA [auth d2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
R [auth D2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
PC [auth b3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
PB [auth B3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
PA [auth b2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
NA [auth Z2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
LA [auth X2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
JC [auth V3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
JA [auth V2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
J [auth J1]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
I [auth I1]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
HB [auth t2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
HA [auth T2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
G [auth G1]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
FC [auth R3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
DB [auth p2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
DA [auth P2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
BC [auth N3]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)
BB [auth n2]	SCOP2B Superfamily	Globin-like	8064854	3000554	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Source
KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], NB [auth y2], VC [auth z3], WC [auth i3]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain	Domain
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein	Domain
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain	Domain
A [auth A1], AA [auth M2], AB [auth m2], AC [auth M3], C [auth C1], A [auth A1], AA [auth M2], AB [auth m2], AC [auth M3], C [auth C1], CA [auth O2], CB [auth o2], CC [auth O3], EA [auth Q2], EB [auth q2], EC [auth Q3], F [auth E1], GA [auth S2], GB [auth s2], GC [auth S3], H [auth H1], IA [auth U2], IB [auth u2], IC [auth U3], KA [auth W2], KC [auth W3], MA [auth Y2], MC [auth Y3], O [auth A2], OA [auth a2], OB [auth A3], OC [auth a3], Q [auth C2], QA [auth c2], QB [auth C3], QC [auth c3], S [auth E2], SA [auth e2], SB [auth E3], SC [auth e3], U [auth G2], UA [auth g2], UB [auth G3], W [auth I2], WA [auth i2], WB [auth I3], Y [auth K2], YA [auth k2], YB [auth K3]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein	Domain
A [auth A1], AA [auth M2], AB [auth m2], AC [auth M3], C [auth C1], A [auth A1], AA [auth M2], AB [auth m2], AC [auth M3], C [auth C1], CA [auth O2], CB [auth o2], CC [auth O3], EA [auth Q2], EB [auth q2], EC [auth Q3], F [auth E1], GA [auth S2], GB [auth s2], GC [auth S3], H [auth H1], IA [auth U2], IB [auth u2], IC [auth U3], KA [auth W2], KC [auth W3], MA [auth Y2], MC [auth Y3], O [auth A2], OA [auth a2], OB [auth A3], OC [auth a3], Q [auth C2], QA [auth c2], QB [auth C3], QC [auth c3], S [auth E2], SA [auth e2], SB [auth E3], SC [auth e3], U [auth G2], UA [auth g2], UB [auth G3], W [auth I2], WA [auth i2], WB [auth I3], Y [auth K2], YA [auth k2], YB [auth K3]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
XC [auth j3], YC [auth k3]	Phycobiliprotein ApcE	lyase activity catalytic activity	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], NB [auth y2], VC [auth z3], WC [auth i3]	Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
K [auth K1], L [auth L1]	Allophycocyanin-B	-	-	-
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	Allophycocyanin beta subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A [auth A1], AA [auth M2], AB [auth m2], AC [auth M3], C [auth C1], A [auth A1], AA [auth M2], AB [auth m2], AC [auth M3], C [auth C1], CA [auth O2], CB [auth o2], CC [auth O3], EA [auth Q2], EB [auth q2], EC [auth Q3], F [auth E1], GA [auth S2], GB [auth s2], GC [auth S3], H [auth H1], IA [auth U2], IB [auth u2], IC [auth U3], KA [auth W2], KC [auth W3], MA [auth Y2], MC [auth Y3], O [auth A2], OA [auth a2], OB [auth A3], OC [auth a3], Q [auth C2], QA [auth c2], QB [auth C3], QC [auth c3], S [auth E2], SA [auth e2], SB [auth E3], SC [auth e3], U [auth G2], UA [auth g2], UB [auth G3], W [auth I2], WA [auth i2], WB [auth I3], Y [auth K2], YA [auth k2], YB [auth K3]	Allophycocyanin alpha subunit	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
XC [auth j3], YC [auth k3]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
XC [auth j3], YC [auth k3]	IPR001297	Phycobilisome linker domain	Domain
XC [auth j3], YC [auth k3]	IPR009050	Globin-like superfamily	Homologous Superfamily
XC [auth j3], YC [auth k3]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
XC [auth j3], YC [auth k3]	IPR012128	Phycobilisome, alpha/beta subunit	Family
KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], NB [auth y2], VC [auth z3], WC [auth i3]	IPR011064	Allophycocyanin linker chain	Homologous Superfamily
KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], NB [auth y2], VC [auth z3], WC [auth i3]	IPR011134	Allophycocyanin linker protein	Family
KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], KB [auth z2], LB [auth w2], M [auth z1], MB [auth x2], N [auth M1], NB [auth y2], VC [auth z3], WC [auth i3]	IPR008213	CpcD-like domain	Domain
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	IPR006245	Allophycocyanin, beta subunit	Family
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], B [auth B1], BA [auth N2], BB [auth n2], BC [auth N3], D [auth D1], DA [auth P2], DB [auth p2], DC [auth P3], E [auth F1], FA [auth R2], FB [auth r2], FC [auth R3], G [auth G1], HA [auth T2], HB [auth t2], HC [auth T3], I [auth I1], J [auth J1], JA [auth V2], JB [auth v2], JC [auth V3], LA [auth X2], LC [auth X3], NA [auth Z2], NC [auth Z3], P [auth B2], PA [auth b2], PB [auth B3], PC [auth b3], R [auth D2], RA [auth d2], RB [auth D3], RC [auth d3], T [auth F2], TA [auth f2], TB [auth F3], TC [auth f3], UC [auth g3], V [auth H2], VA [auth h2], VB [auth H3], X [auth J2], XA [auth j2], XB [auth J3], Z [auth L2], ZA [auth l2], ZB [auth L3], ZC [auth h3]	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079