9M2W | pdb_00009m2w

The cryo-EM structure of 26S proteasome-Midnolin complex in the MD state

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyClass II glutamine amidotransferases 8064014 3000131 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064014 3000131 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyClass II glutamine amidotransferases 8064036 3000131 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064036 3000131 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyClass II glutamine amidotransferases 8064004 3000131 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064004 3000131 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyClass II glutamine amidotransferases 8064022 3000131 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064022 3000131 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyClass II glutamine amidotransferases 8064060 3000131 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064060 3000131 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyClass II glutamine amidotransferases 8064054 3000131 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064054 3000131 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyClass II glutamine amidotransferases 8079175 3000131 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079175 3000131 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyClass II glutamine amidotransferases 8064074 3000131 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064074 3000131 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyClass II glutamine amidotransferases 8079492 3000131 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079492 3000131 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyWinged helix DNA-binding domain 8067905 3000034 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyTPR-like 8057045 3001345 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyWinged helix DNA-binding domain 8057047 3000034 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053251 3002167 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyJAB1/MPN domain-like 8053252 3001105 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyJAB1/MPN domain-like 8053255 3001105 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053254 3002167 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF2123626S proteasome regulatory subunit 7, OB domain (OB_PRS7)26S proteasome regulatory subunit 7, OB domainThis is the OB domain from 26S proteasome regulatory subunit 7 (PRS7, also known as PSMC2, Rpt1 or MSS1), a component of the 19S proteasome cap [1-5]. These are one of six ATPases of the regulatory particle that form a heterohexameric ring. This doma ...This is the OB domain from 26S proteasome regulatory subunit 7 (PRS7, also known as PSMC2, Rpt1 or MSS1), a component of the 19S proteasome cap [1-5]. These are one of six ATPases of the regulatory particle that form a heterohexameric ring. This domain mediates interactions with USP14 or Ubp6 [2,4].
Domain
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domainDomain
PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF05160DSS1/SEM1 family (DSS1_SEM1)DSS1/SEM1 family- Family
PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
PF17781RPN1 N-terminal domain (RPN1_RPN2_N)RPN1 N-terminal domain- Repeat
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
G,
GA [auth g]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
G,
GA [auth g]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
H,
HA [auth h]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
H,
HA [auth h]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
I,
IA [auth i]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
I,
IA [auth i]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
J,
JA [auth j]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
J,
JA [auth j]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
K,
KA [auth k]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
K,
KA [auth k]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
L,
LA [auth l]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
L,
LA [auth l]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
M,
MA [auth m]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
M,
MA [auth m]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
O,
OA [auth o]		PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
P,
PA [auth p]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
Q,
QA [auth q]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
S,
SA [auth s]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
T,
TA [auth t]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating interactions with the ubiquitin-binding subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were shown to be equally effective at binding Rpn13. Multiple sequence alignments indicate that Rpn2 orthologs are highly conserved in this C-terminal region and share characteristic acidic, aromatic, and proline residues, suggesting a common function. In the structure of Rpn2 from S. cerevisiae , this region is exposed and disordered, and is thus accessible for associating with Rpn13. The Rpn2 binding surface of human Rpn13 has been mapped by nuclear magnetic resonance titration to one surface of its Pru domain [1].
Domain
PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degradation machine: the lid, the base, and the core. The helices found at the C terminus of each lid subunit form a helical bundle that directs the ordered self-assembly of the lid subcomplex. This domain which comprises the tail of RPN5 along with the tail of Rpn9, are important for Rpn12 binding to the lid [1].
Domain
PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. Domain
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. Domain
PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
26S proteasome regulatory subunit 7
26S proteasome regulatory subunit 4
26S proteasome regulatory subunit 8
26S proteasome regulatory subunit 6B
26S proteasome regulatory subunit 10B
26S proteasome regulatory subunit 6A
G,
GA [auth g]		Proteasome subunit alpha type-6
H,
HA [auth h]		Proteasome subunit alpha type-2-
I,
IA [auth i]		Proteasome subunit alpha type-4-
J,
JA [auth j]		Proteasome subunit alpha type-7
K,
KA [auth k]		Proteasome subunit alpha type-5-
L,
LA [auth l]		Proteasome subunit alpha type-1
M,
MA [auth m]		Proteasome subunit alpha type-3
N,
NA [auth n]		Proteasome subunit beta type-6
O,
OA [auth o]		Proteasome subunit beta type-7
P,
PA [auth p]		Proteasome subunit beta type-3-
Q,
QA [auth q]		Proteasome subunit beta type-2-
R,
RA [auth r]		Proteasome subunit beta type-5
S,
SA [auth s]		Proteasome subunit beta type-1-
T,
TA [auth t]		Proteasome subunit beta type-4
26S proteasome non-ATPase regulatory subunit 1
26S proteasome non-ATPase regulatory subunit 3
26S proteasome non-ATPase regulatory subunit 12-
26S proteasome non-ATPase regulatory subunit 11
26S proteasome non-ATPase regulatory subunit 6-
26S proteasome non-ATPase regulatory subunit 7
AA [auth a]26S proteasome non-ATPase regulatory subunit 13
BA [auth b]26S proteasome non-ATPase regulatory subunit 4
CA [auth c]26S proteasome non-ATPase regulatory subunit 14
DA [auth d]26S proteasome non-ATPase regulatory subunit 8-
EA [auth e]26S proteasome complex subunit SEM1-
FA [auth f]26S proteasome non-ATPase regulatory subunit 2
UA [auth v]Substrate---
VA [auth u]Midnolin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR05022126S Proteasome Regulatory ATPaseFamily
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR04872326S proteasome regulatory subunit 7-like, OB domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR05022126S Proteasome Regulatory ATPaseFamily
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR032501Proteasomal ATPase, second OB domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR05022126S Proteasome Regulatory ATPaseFamily
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR032501Proteasomal ATPase, second OB domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR05022126S Proteasome Regulatory ATPaseFamily
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR032501Proteasomal ATPase, second OB domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR05022126S Proteasome Regulatory ATPaseFamily
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR032501Proteasomal ATPase, second OB domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR05022126S Proteasome Regulatory ATPaseFamily
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR032501Proteasomal ATPase, second OB domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G,
GA [auth g]		IPR034642Proteasome subunit alpha6Family
G,
GA [auth g]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
G,
GA [auth g]		IPR050115Proteasome subunit alphaFamily
G,
GA [auth g]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G,
GA [auth g]		IPR023332Proteasome alpha-type subunitFamily
G,
GA [auth g]		IPR001353Proteasome, subunit alpha/betaFamily
H,
HA [auth h]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H,
HA [auth h]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
H,
HA [auth h]		IPR050115Proteasome subunit alphaFamily
H,
HA [auth h]		IPR023332Proteasome alpha-type subunitFamily
H,
HA [auth h]		IPR001353Proteasome, subunit alpha/betaFamily
I,
IA [auth i]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
I,
IA [auth i]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
I,
IA [auth i]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
I,
IA [auth i]		IPR050115Proteasome subunit alphaFamily
I,
IA [auth i]		IPR023332Proteasome alpha-type subunitFamily
I,
IA [auth i]		IPR001353Proteasome, subunit alpha/betaFamily
J,
JA [auth j]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J,
JA [auth j]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
J,
JA [auth j]		IPR050115Proteasome subunit alphaFamily
J,
JA [auth j]		IPR023332Proteasome alpha-type subunitFamily
J,
JA [auth j]		IPR001353Proteasome, subunit alpha/betaFamily
K,
KA [auth k]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
K,
KA [auth k]		IPR033812Proteasome subunit alpha5Family
K,
KA [auth k]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
K,
KA [auth k]		IPR050115Proteasome subunit alphaFamily
K,
KA [auth k]		IPR023332Proteasome alpha-type subunitFamily
K,
KA [auth k]		IPR001353Proteasome, subunit alpha/betaFamily
L,
LA [auth l]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
L,
LA [auth l]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
L,
LA [auth l]		IPR050115Proteasome subunit alphaFamily
L,
LA [auth l]		IPR035144Proteasome subunit alpha 1Family
L,
LA [auth l]		IPR023332Proteasome alpha-type subunitFamily
L,
LA [auth l]		IPR001353Proteasome, subunit alpha/betaFamily
M,
MA [auth m]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
M,
MA [auth m]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
M,
MA [auth m]		IPR050115Proteasome subunit alphaFamily
M,
MA [auth m]		IPR023332Proteasome alpha-type subunitFamily
M,
MA [auth m]		IPR001353Proteasome, subunit alpha/betaFamily
N,
NA [auth n]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
N,
NA [auth n]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
N,
NA [auth n]		IPR023333Proteasome B-type subunitFamily
N,
NA [auth n]		IPR001353Proteasome, subunit alpha/betaFamily
N,
NA [auth n]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
O,
OA [auth o]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
O,
OA [auth o]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
O,
OA [auth o]		IPR024689Proteasome beta subunit, C-terminalDomain
O,
OA [auth o]		IPR023333Proteasome B-type subunitFamily
O,
OA [auth o]		IPR001353Proteasome, subunit alpha/betaFamily
O,
OA [auth o]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
P,
PA [auth p]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
P,
PA [auth p]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
P,
PA [auth p]		IPR023333Proteasome B-type subunitFamily
P,
PA [auth p]		IPR001353Proteasome, subunit alpha/betaFamily
P,
PA [auth p]		IPR033811Proteasome beta 3 subunitFamily
Q,
QA [auth q]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
Q,
QA [auth q]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
Q,
QA [auth q]		IPR023333Proteasome B-type subunitFamily
Q,
QA [auth q]		IPR001353Proteasome, subunit alpha/betaFamily
Q,
QA [auth q]		IPR035206Proteasome subunit beta 2Family
R,
RA [auth r]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
R,
RA [auth r]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
R,
RA [auth r]		IPR023333Proteasome B-type subunitFamily
R,
RA [auth r]		IPR001353Proteasome, subunit alpha/betaFamily
R,
RA [auth r]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
S,
SA [auth s]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
S,
SA [auth s]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
S,
SA [auth s]		IPR023333Proteasome B-type subunitFamily
S,
SA [auth s]		IPR001353Proteasome, subunit alpha/betaFamily
T,
TA [auth t]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
T,
TA [auth t]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
T,
TA [auth t]		IPR023333Proteasome B-type subunitFamily
T,
TA [auth t]		IPR016295Proteasome subunit beta 4Family
T,
TA [auth t]		IPR001353Proteasome, subunit alpha/betaFamily
IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
IPR016024Armadillo-type foldHomologous Superfamily
IPR002015Proteasome/cyclosome repeatRepeat
IPR011989Armadillo-like helicalHomologous Superfamily
IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
IPR01358626S proteasome non-ATPase regulatory subunit 3, C-terminalDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR050756COP9 signalosome complex subunit 3Family
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR000717Proteasome component (PCI) domainDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR000717Proteasome component (PCI) domainDomain
IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
IPR054559PSMD12/CSN4-like, N-terminalDomain
IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
IPR000717Proteasome component (PCI) domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
IPR000717Proteasome component (PCI) domainDomain
IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
IPR024969EIF3F/CSN6-like, C-terminalDomain
IPR037518MPN domainDomain
IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
AA [auth a]IPR054179PSD13, N-terminalDomain
AA [auth a]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth a]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
AA [auth a]IPR000717Proteasome component (PCI) domainDomain
BA [auth b]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
BA [auth b]IPR02704026S proteasome non-ATPase regulatory subunit 4Family
BA [auth b]IPR002035von Willebrand factor, type ADomain
BA [auth b]IPR003903Ubiquitin interacting motifConserved Site
BA [auth b]IPR049590PSMD4, RAZUL domainDomain
CA [auth c]IPR05626326S proteasome regulatory subunit RPN11, C-terminal domainDomain
CA [auth c]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
CA [auth c]IPR037518MPN domainDomain
CA [auth c]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
DA [auth d]IPR000717Proteasome component (PCI) domainDomain
DA [auth d]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
DA [auth d]IPR033464CSN8/PSMD8/EIF3KDomain
EA [auth e]IPR007834DSS1/SEM1Family
FA [auth f]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
FA [auth f]IPR016024Armadillo-type foldHomologous Superfamily
FA [auth f]IPR002015Proteasome/cyclosome repeatRepeat
FA [auth f]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
FA [auth f]IPR011989Armadillo-like helicalHomologous Superfamily
FA [auth f]IPR040892RPN1, N-terminalDomain
VA [auth u]IPR039336MidnolinFamily
VA [auth u]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
VA [auth u]IPR000626Ubiquitin-like domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
Pharos:  P35998
Pharos:  P62195
Pharos:  P43686
Pharos:  P17980
G,
GA [auth g]		Pharos:  P60900
H,
HA [auth h]		Pharos:  P25787
I,
IA [auth i]		Pharos:  P25789
J,
JA [auth j]		Pharos:  O14818
K,
KA [auth k]		Pharos:  P28066
L,
LA [auth l]		Pharos:  P25786
M,
MA [auth m]		Pharos:  P25788
N,
NA [auth n]		Pharos:  P28072
O,
OA [auth o]		Pharos:  Q99436
P,
PA [auth p]		Pharos:  P49720
Q,
QA [auth q]		Pharos:  P49721
R,
RA [auth r]		Pharos:  P28074
S,
SA [auth s]		Pharos:  P20618
T,
TA [auth t]		Pharos:  P28070
Pharos:  Q99460
Pharos:  O43242
Pharos:  O00232
Pharos:  O00231
Pharos:  Q15008
Pharos:  P51665
AA [auth a]Pharos:  Q9UNM6
BA [auth b]Pharos:  P55036
CA [auth c]Pharos:  O00487
DA [auth d]Pharos:  P48556
EA [auth e]Pharos:  P60896
FA [auth f]Pharos:  Q13200
VA [auth u]Pharos:  Q504T8