9M1M | pdb_00009m1m

Cryo-EM structure of the TBC-DEC-Arl2-alpha-beta-tubulin complex with GDP-AlFx


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth E]SCOP2B SuperfamilyUbiquitin-like 8087168 3000157 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyRas-like P-loop GTPases 8060239 3002022 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth C]PF07986Tubulin binding cofactor C (TBCC)Tubulin binding cofactor CMembers of this family are involved in the folding pathway of tubulins and form a beta helix structure [2]. Domain
B [auth D]PF25767Tubulin-specific chaperone D-like, ARM repeats (ARM_TBCD_2nd)Tubulin-specific chaperone D-like, ARM repeats- Repeat
B [auth D]PF23579Tubulin-specific chaperone D-like, ARM repeat (ARM_TBCD)Tubulin-specific chaperone D-like, ARM repeat- Repeat
B [auth D]PF12612Tubulin folding cofactor D C terminal (TFCD_C)Tubulin folding cofactor D C terminal- Family
C [auth E]PF14560Ubiquitin-like domain (Ubiquitin_2)Ubiquitin-like domainThis entry contains ubiquitin-like domains [1-2]. Domain
C [auth E]PF01302CAP-Gly domain (CAP_GLY)CAP-Gly domainCytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP ...Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein Swiss:Q20728 CAP-Gly domain was recently solved [2]. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove [2].
Domain
D [auth G]PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families together Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]Tubulin-specific chaperone C
B [auth D]Tubulin-specific chaperone D
C [auth E]Tubulin-specific chaperone E
D [auth G]ADP-ribosylation factor-like protein 2
E [auth a]Tubulin alpha-1B chain
F [auth b]Tubulin beta chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR017901C-CAP/cofactor C-like domainDomain
A [auth C]IPR012945Tubulin binding cofactor C-like domainDomain
A [auth C]IPR031925Tubulin-specific chaperone C, N-terminalDomain
A [auth C]IPR006599CARP motifDomain
A [auth C]IPR016098Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminalHomologous Superfamily
A [auth C]IPR038397TBCC, N-terminal domain superfamilyHomologous Superfamily
A [auth C]IPR027684Tubulin-specific chaperone CFamily
B [auth D]IPR016024Armadillo-type foldHomologous Superfamily
B [auth D]IPR011989Armadillo-like helicalHomologous Superfamily
B [auth D]IPR022577Tubulin-folding cofactor D, C-terminal domainDomain
B [auth D]IPR033162Tubulin-folding cofactor DFamily
C [auth E]IPR036859CAP Gly-rich domain superfamilyHomologous Superfamily
C [auth E]IPR000626Ubiquitin-like domainDomain
C [auth E]IPR000938CAP Gly-rich domainDomain
C [auth E]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
C [auth E]IPR044079TBCE, ubiquitin-like (Ubl) domainDomain
C [auth E]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
D [auth G]IPR045873ADP-ribosylation factor-like protein 2Family
D [auth G]IPR044612ADP-ribosylation factor-like protein 2/3Family
D [auth G]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth G]IPR005225Small GTP-binding domainDomain
D [auth G]IPR006689Small GTPase superfamily, ARF/SAR typeFamily
E [auth a]IPR003008Tubulin/FtsZ, GTPase domainDomain
E [auth a]IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
E [auth a]IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
E [auth a]IPR017975Tubulin, conserved siteConserved Site
E [auth a]IPR002452Alpha tubulinFamily
E [auth a]IPR000217TubulinFamily
E [auth a]IPR023123Tubulin, C-terminalHomologous Superfamily
E [auth a]IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
E [auth a]IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
F [auth b]IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
F [auth b]IPR017975Tubulin, conserved siteConserved Site
F [auth b]IPR023123Tubulin, C-terminalHomologous Superfamily
F [auth b]IPR002453Beta tubulinFamily
F [auth b]IPR013838Beta tubulin, autoregulation binding siteBinding Site
F [auth b]IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
F [auth b]IPR003008Tubulin/FtsZ, GTPase domainDomain
F [auth b]IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
F [auth b]IPR000217TubulinFamily
F [auth b]IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth C]PharosQ15814
B [auth D]PharosQ9BTW9
C [auth E]PharosQ15813
D [auth G]PharosP36404