9LZL | pdb_00009lzl

Flat-contact of Flock House Virus early disassembly intermediate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8071984	3000918	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8071984	3000918	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8071984	3000918	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8071984	3000918	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8071984	3000918	SCOP2B (2022-06-29)
K [auth I]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8071984	3000918	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth D], D [auth E], F, H [auth J], J [auth K], B [auth D], D [auth E], F, H [auth J], J [auth K], L	Capsid protein alpha	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component
A, C [auth B], E [auth C], G, I [auth H], A, C [auth B], E [auth C], G, I [auth H], K [auth I]	Capsid protein alpha	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D], D [auth E], F, H [auth J], J [auth K], B [auth D], D [auth E], F, H [auth J], J [auth K], L	IPR029053	Viral coat protein subunit	Homologous Superfamily
B [auth D], D [auth E], F, H [auth J], J [auth K], B [auth D], D [auth E], F, H [auth J], J [auth K], L	IPR000696	Peptidase A6, nodavirus coat protein	Family
A, C [auth B], E [auth C], G, I [auth H], A, C [auth B], E [auth C], G, I [auth H], K [auth I]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, C [auth B], E [auth C], G, I [auth H], A, C [auth B], E [auth C], G, I [auth H], K [auth I]	IPR000696	Peptidase A6, nodavirus coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.