9LY8 | pdb_00009ly8

Cryo-EM structure of carboxysomal midi-shell: T=9 shell under C1 symmetry


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03319Ethanolamine utilisation protein EutN/carboxysome (EutN_CcmL)Ethanolamine utilisation protein EutN/carboxysomeThe crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a ...The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the center. this suggests that EutN forms a pore, with an opening of 26 Angstrom in diameter on one face and 14 Angstrom on the other face [2]. EutN is involved in the cobalamin-dependent degradation of ethanolamine [1].
Domain
PF00936BMC domain (BMC)BMC domainBacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Carboxysome shell vertex protein CsoS4A-
Carboxysome assembly protein CsoS2B
Major carboxysome shell protein CsoS1A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR004992Ethanolamine utilization protein EutN/carboxysome shell vertex protein CcmLFamily
IPR036677EutN/Ccml superfamilyHomologous Superfamily
IPR014076Carboxysome shell vertex protein CsoS4AFamily
IPR020990Carboxysome assembly protein CsoS2/2BFamily
IPR020808Bacterial microcompartments protein, conserved siteConserved Site
IPR000249Bacterial microcompartment domainDomain
IPR050575Bacterial microcompartment shellFamily
IPR044872CcmK/CsoS1, bacterial microcompartment domainDomain
IPR037233CcmK-like superfamilyHomologous Superfamily