Annotations: 9LWK

The hinge-arm region of HBx-Smc5/6 ubiquitination complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth I]	adh_short_C2	e9lwkI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: adh_short_C2	ECOD (v295.2)
A	adh_short_C2	e9lwkA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: adh_short_C2	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth I]	Structural maintenance of chromosomes protein 5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA secondary structure binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity single-stranded DNA binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell division DNA recombination mitotic recombination telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell division DNA recombination mitotic recombination telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization telomere maintenance via recombination metabolic process cellular component organization or biogenesis macromolecule metabolic process regulation of maintenance of mitotic sister chromatid cohesion positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization mitotic sister chromatid cohesion positive regulation of biological process maintenance of sister chromatid cohesion maintenance of mitotic sister chromatid cohesion positive regulation of cell cycle process cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process regulation of biological process regulation of cell cycle process biological regulation sister chromatid cohesion regulation of chromosome organization positive regulation of maintenance of sister chromatid cohesion positive regulation of maintenance of mitotic sister chromatid cohesion positive regulation of sister chromatid cohesion regulation of organelle organization positive regulation of cell cycle positive regulation of chromosome organization regulation of maintenance of sister chromatid cohesion regulation of sister chromatid cohesion peptidyl-lysine modification protein sumoylation macromolecule modification protein metabolic process protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal host-mediated suppression of viral genome replication biological process involved in interspecies interaction between organisms viral genome replication viral process viral life cycle host-mediated perturbation of viral process modulation of process of another organism host-mediated perturbation of symbiont process positive regulation of chromosome segregation regulation of chromosome segregation chromosome segregation regulation of telomere maintenance regulation of primary metabolic process regulation of nucleobase-containing compound metabolic process regulation of macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process cellular senescence chromatin looping chromatin organization double-strand break repair recombinational repair double-strand break repair via homologous recombination DNA repair	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen chromosome, centromeric region chromosome chromosomal region cytoplasm protein-containing complex catalytic complex SUMO ligase complex transferase complex Smc5-Smc6 complex condensed chromosome sex chromosome interchromatin granule site of double-strand break site of DNA damage chromosome, telomeric region PML body
A	Structural maintenance of chromosomes protein 6	DNA binding binding damaged DNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding DNA binding binding damaged DNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA secondary structure binding ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding single-stranded DNA binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process DNA recombination mitotic recombination telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process DNA recombination mitotic recombination telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization telomere maintenance via recombination metabolic process cellular component organization or biogenesis macromolecule metabolic process peptidyl-lysine modification protein sumoylation macromolecule modification protein metabolic process protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal host-mediated suppression of viral genome replication biological process involved in interspecies interaction between organisms viral genome replication viral process viral life cycle host-mediated perturbation of viral process modulation of process of another organism host-mediated perturbation of symbiont process positive regulation of chromosome segregation regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle positive regulation of cell cycle process cell cycle regulation of cell cycle chromosome segregation positive regulation of cellular process cell cycle process regulation of telomere maintenance regulation of cellular component organization regulation of primary metabolic process regulation of nucleobase-containing compound metabolic process regulation of chromosome organization regulation of macromolecule metabolic process regulation of organelle organization regulation of metabolic process regulation of DNA metabolic process cellular senescence chromatin looping chromatin organization double-strand break repair recombinational repair double-strand break repair via homologous recombination DNA repair	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen chromosome, centromeric region chromosome chromosomal region protein-containing complex catalytic complex SUMO ligase complex transferase complex Smc5-Smc6 complex condensed chromosome sex chromosome interchromatin granule mitotic spindle spindle cytoskeleton mitotic spindle pole spindle pole microtubule cytoskeleton site of double-strand break site of DNA damage chromosome, telomeric region PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth I]	IPR038729	Rad50/SbcC-type AAA domain	Domain
B [auth I]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR003395	RecF/RecN/SMC, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth I]	: Q8IY18	Liver Cirrhosis, Experimental astrocytic tumor large cell medulloblastoma malignant glioma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor osteosarcoma Pick disease psoriasis glioblastoma malignant ependymoma ovarian cancer pilocytic astrocytoma rheumatoid arthritis
A	: Q96SB8	atypical teratoid rhabdoid tumor large cell medulloblastoma Malignant neoplasm of breast osteosarcoma Pick disease Sjogren syndrome breast cancer lung cancer medulloblastoma ovarian cancer primitive neuroectodermal tumor diabetes mellitus malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor large cell medulloblastoma Malignant neoplasm of breast osteosarcoma Pick disease Sjogren syndrome breast cancer lung cancer medulloblastoma ovarian cancer primitive neuroectodermal tumor diabetes mellitus malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9LWK | pdb_00009lwk

The hinge-arm region of HBx-Smc5/6 ubiquitination complex

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation