9LUN | pdb_00009lun

Cryo-EM structure of Arabidopsis thaliana RGA in complex with GID1A, SLY1, and ASK2 (consensus map)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
B	PF07859	alpha/beta hydrolase fold (Abhydrolase_3)	alpha/beta hydrolase fold	This catalytic domain is found in a very wide range of enzymes.	Domain
A	PF12041	Transcriptional regulator DELLA protein N terminal (DELLA)	Transcriptional regulator DELLA protein N terminal	Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DE ...	Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins. [1]	Domain
A	PF03514	GRAS domain family (GRAS)	GRAS domain family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	SKP1-like protein 1B	-	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein metabolic process developmental process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein metabolic process developmental process multicellular organismal process reproductive system development reproductive process embryo development developmental process involved in reproduction multicellular organism development fruit development embryo development ending in seed dormancy seed development anatomical structure development reproductive structure development post-embryonic development system development cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling cellular response to ethylene stimulus response to endogenous stimulus biological regulation hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus cellular response to chemical stimulus ethylene-activated signaling pathway response to hormone response to chemical response to ethylene signal transduction cellular response to hormone stimulus response to auxin cell cycle chromosome segregation cell cycle process response to lipid response to jasmonic acid response to fatty acid response to oxygen-containing compound cellular response to jasmonic acid stimulus jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to lipid protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal auxin-activated signaling pathway cellular response to auxin stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex nucleus
C	F-box protein GID2	-	developmental process multicellular organismal process reproductive system development reproductive process multicellular organismal reproductive process developmental maturation developmental process involved in reproduction seed dormancy process multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development developmental process multicellular organismal process reproductive system development reproductive process multicellular organismal reproductive process developmental maturation developmental process involved in reproduction seed dormancy process multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development dormancy process seed maturation system development cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway regulation of biological process response to endogenous stimulus gibberellic acid mediated signaling pathway biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid cellular process primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal seed germination seedling development regulation of signal transduction regulation of signaling regulation of gibberellic acid mediated signaling pathway regulation of response to stimulus regulation of cell communication	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
B	Gibberellin receptor GID1A	organic acid binding binding ion binding anion binding isoprenoid binding gibberellin binding lipid binding carboxylic acid binding hormone binding small molecule binding hydrolase activity catalytic activity	developmental process multicellular organismal process reproductive system development fruit morphogenesis reproductive process developmental process involved in reproduction post-embryonic plant morphogenesis anatomical structure morphogenesis multicellular organism development fruit development anatomical structure development reproductive structure development system development plant organ development developmental process multicellular organismal process reproductive system development fruit morphogenesis reproductive process developmental process involved in reproduction post-embryonic plant morphogenesis anatomical structure morphogenesis multicellular organism development fruit development anatomical structure development reproductive structure development system development plant organ development flower development post-embryonic plant organ morphogenesis plant organ morphogenesis reproductive shoot system development post-embryonic plant organ development post-embryonic development shoot system development floral organ morphogenesis floral organ development response to gibberellin response to lipid response to stimulus response to hormone response to chemical response to endogenous stimulus response to oxygen-containing compound response to decreased oxygen levels cellular response to stimulus cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus cellular response to stress response to hypoxia response to stress response to oxygen levels response to abiotic stimulus cellular process regulation of biological process sexual reproduction regulation of reproductive process fertilization biological regulation positive regulation of biological process regulation of fertilization positive regulation of fertilization positive regulation of reproductive process cellular response to gibberellin stimulus regulation of cellular process signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway cellular response to oxygen-containing compound cellular response to lipid positive regulation of cell communication positive regulation of signal transduction positive regulation of gibberellic acid mediated signaling pathway regulation of signal transduction positive regulation of response to stimulus positive regulation of cellular process regulation of signaling gibberellic acid mediated signaling pathway regulation of gibberellic acid mediated signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A	DELLA protein RGA	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity chromatin binding promoter-specific chromatin binding	multicellular organismal process regulation of developmental process regulation of reproductive process reproductive process developmental process involved in reproduction seed dormancy process multicellular organism development fruit development seed development regulation of seed maturation anatomical structure development reproductive structure development post-embryonic development regulation of multicellular organismal process multicellular organismal process regulation of developmental process regulation of reproductive process reproductive process developmental process involved in reproduction seed dormancy process multicellular organism development fruit development seed development regulation of seed maturation anatomical structure development reproductive structure development post-embryonic development regulation of multicellular organismal process seed maturation system development developmental process regulation of biological process regulation of multicellular organismal development reproductive system development regulation of seed development multicellular organismal reproductive process biological regulation developmental maturation regulation of post-embryonic development regulation of seed dormancy process dormancy process regulation of seedling development seed germination seedling development regulation of seed germination cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway response to endogenous stimulus gibberellic acid mediated signaling pathway response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process response to stress response to abiotic stimulus response to cold response to temperature stimulus catabolic process regulation of protein metabolic process protein catabolic process regulation of catabolic process macromolecule catabolic process protein metabolic process regulation of protein catabolic process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of DNA-templated transcription positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process response to light stimulus response to far red light response to radiation response to red or far red light sexual reproduction cytoskeleton-dependent cytokinesis meiotic cell cycle cytokinesis meiotic cytokinesis meiotic cell cycle process cell division cell cycle cell cycle process negative regulation of developmental vegetative growth developmental vegetative growth regulation of growth regulation of developmental growth developmental growth negative regulation of developmental process growth negative regulation of biological process negative regulation of developmental growth negative regulation of growth regulation of developmental vegetative growth plant organ development negative regulation of leaf development leaf development shoot system development regulation of leaf development negative regulation of multicellular organismal process phyllome development cellular developmental process negative regulation of signaling plant epidermis development negative regulation of trichome patterning pattern specification process regulation of cell differentiation negative regulation of cell communication cell differentiation trichome differentiation negative regulation of cellular process regulation of signaling cell-cell signaling tissue development regionalization trichome patterning cell-cell signaling involved in cell fate commitment regulation of cell communication regulation of trichome patterning cell fate commitment regulation of signal transduction negative regulation of response to stimulus negative regulation of gibberellic acid mediated signaling pathway regulation of gibberellic acid mediated signaling pathway negative regulation of signal transduction regulation of response to stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR016073	SKP1 component, POZ domain	Domain
D	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
D	IPR001232	S-phase kinase-associated protein 1-like	Family
D	IPR016072	SKP1 component, dimerisation	Domain
D	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
D	IPR016897	S-phase kinase-associated protein 1	Family
C	IPR036047	F-box-like domain superfamily	Homologous Superfamily
C	IPR044184	F-box protein SNE/GID2	Family
C	IPR001810	F-box domain	Domain
B	IPR033140	Lipase, GDXG, putative serine active site	Active Site
B	IPR002168	Lipase, GDXG, putative histidine active site	Active Site
B	IPR013094	Alpha/beta hydrolase fold-3	Domain
B	IPR050466	Diverse Carboxylesterases and Gibberellin Receptors	Family
B	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
A	IPR038088	DELLA, N-terminal domain superfamily	Homologous Superfamily
A	IPR005202	Transcription factor GRAS	Family
A	IPR021914	Transcriptional factor DELLA, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.