9LTI | pdb_00009lti

Cryo-EM structure of LH1-RC from Ery. sanguineus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
IA [auth M]	DOCK_N	e9ltiM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DOCK_N	ECOD (v295.2)
HA [auth H]	DOCK_N	e9ltiH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DOCK_N	ECOD (v295.2)
GA [auth L]	RVT_1	e9ltiL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVT_1	ECOD (v295.2)
Z [auth c]	FliD_C	e9ltic1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
Y [auth j]	FliD_C	e9ltij1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
X [auth k]	FliD_C	e9ltik1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
W [auth r]	FliD_C	e9ltir1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
V [auth s]	FliD_C	e9ltis1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
U [auth n]	FliD_C	e9ltin1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
T [auth o]	FliD_C	e9ltio1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
S [auth p]	FliD_C	e9ltip1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
R [auth a]	DOCK_N	e9ltia1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DOCK_N	ECOD (v295.2)
Q [auth b]	FliD_C	e9ltib1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
FA [auth i]	FliD_C	e9ltii1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
EA [auth q]	FliD_C	e9ltiq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
DA [auth g]	FliD_C	e9ltig1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
CA [auth f]	FliD_C	e9ltif1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
BA [auth e]	FliD_C	e9ltie1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
AA [auth d]	FliD_C	e9ltid1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
P	FliD_C	e9ltiP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
O	FliD_C	e9ltiO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
N	FliD_C	e9ltiN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
M [auth S]	FliD_C	e9ltiS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
L [auth R]	FliD_C	e9ltiR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
K	FliD_C	e9ltiK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
J	FliD_C	e9ltiJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
I	FliD_C	e9ltiI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
H [auth Q]	FliD_C	e9ltiQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
G	FliD_C	e9ltiG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
F	FliD_C	e9ltiF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
E	FliD_C	e9ltiE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
D	FliD_C	e9ltiD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
C	FliD_C	e9ltiC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
B	FliD_C	e9ltiB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
A	DOCK_N	e9ltiA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DOCK_N	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
JA [auth T]	Secreted protein	-	-	-
IA [auth M]	Reaction center protein M chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular vesicle light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle vesicle
HA [auth H]	Photosynthetic reaction center H subunit	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle
GA [auth L]	Reaction center protein L chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure endomembrane system membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm cellular anatomical structure endomembrane system membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], FA [auth i], Q [auth b], R [auth a], S [auth p], T [auth o], U [auth n], V [auth s], W [auth r], X [auth k], Y [auth j], Z [auth c]	Antenna complex alpha/beta subunit	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A, B, C, D, E, A, B, C, D, E, F, G, H [auth Q], I, J, K, L [auth R], M [auth S], N, O, P	Light-harvesting complex 1 alpha chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
IA [auth M]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
IA [auth M]	IPR005781	Photosynthetic reaction centre, M subunit	Family
IA [auth M]	IPR000484	Photosynthetic reaction centre, L/M	Family
IA [auth M]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
HA [auth H]	IPR014747	Bacterial photosynthetic reaction centre, H-chain, C-terminal	Homologous Superfamily
HA [auth H]	IPR015810	Photosynthetic reaction centre, H subunit, N-terminal	Domain
HA [auth H]	IPR005652	Photosynthetic reaction centre, H subunit	Family
HA [auth H]	IPR037097	Photosynthetic reaction centre, H subunit, N-terminal domain superfamily	Homologous Superfamily
HA [auth H]	IPR011033	PRC-barrel-like superfamily	Homologous Superfamily
HA [auth H]	IPR027275	PRC-barrel domain	Domain
GA [auth L]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
GA [auth L]	IPR000484	Photosynthetic reaction centre, L/M	Family
GA [auth L]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
GA [auth L]	IPR005871	Photosynthetic reaction centre, L subunit	Family
AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], FA [auth i], Q [auth b], R [auth a], S [auth p], T [auth o], U [auth n], V [auth s], W [auth r], X [auth k], Y [auth j], Z [auth c]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], FA [auth i], Q [auth b], R [auth a], S [auth p], T [auth o], U [auth n], V [auth s], W [auth r], X [auth k], Y [auth j], Z [auth c]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], FA [auth i], Q [auth b], R [auth a], S [auth p], T [auth o], U [auth n], V [auth s], W [auth r], X [auth k], Y [auth j], Z [auth c]	IPR035889	Light-harvesting complex	Homologous Superfamily
AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], FA [auth i], Q [auth b], R [auth a], S [auth p], T [auth o], U [auth n], V [auth s], W [auth r], X [auth k], Y [auth j], Z [auth c]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], AA [auth d], BA [auth e], CA [auth f], DA [auth g], EA [auth q], FA [auth i], Q [auth b], R [auth a], S [auth p], T [auth o], U [auth n], V [auth s], W [auth r], X [auth k], Y [auth j], Z [auth c]	IPR002362	Light-harvesting protein B beta chain	Family
A, B, C, D, E, A, B, C, D, E, F, G, H [auth Q], I, J, K, L [auth R], M [auth S], N, O, P	IPR000066	Antenna complex, alpha/beta subunit	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H [auth Q], I, J, K, L [auth R], M [auth S], N, O, P	IPR018332	Antenna complex, alpha subunit	Family
A, B, C, D, E, A, B, C, D, E, F, G, H [auth Q], I, J, K, L [auth R], M [auth S], N, O, P	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
A, B, C, D, E, A, B, C, D, E, F, G, H [auth Q], I, J, K, L [auth R], M [auth S], N, O, P	IPR035889	Light-harvesting complex	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.