9LT4 | pdb_00009lt4

Cryo-EM structure of light harvesting complex 2 from Ery. sanguineus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R [auth b]	FliD_C	e9lt4b1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
Q [auth c]	FliD_C	e9lt4c1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
P [auth d]	FliD_C	e9lt4d1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
O [auth e]	FliD_C	e9lt4e1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
N [auth f]	FliD_C	e9lt4f1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
M [auth g]	FliD_C	e9lt4g1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
L [auth h]	FliD_C	e9lt4h1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
C [auth a]	DOCK_N	e9lt4a1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DOCK_N	ECOD (v295.2)
B [auth i]	FliD_C	e9lt4i1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
K [auth B]	FliD_C	e9lt4B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
J [auth C]	FliD_C	e9lt4C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
I [auth D]	FliD_C	e9lt4D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
H [auth E]	FliD_C	e9lt4E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
G [auth F]	FliD_C	e9lt4F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
F [auth G]	FliD_C	e9lt4G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
E [auth H]	FliD_C	e9lt4H1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
D [auth I]	FliD_C	e9lt4I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: FliD_C	ECOD (v295.2)
A	DOCK_N	e9lt4A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DOCK_N	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], O [auth e], P [auth d], Q [auth c], R [auth b]	Light-harvesting protein B-800-850 beta chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A, D [auth I], E [auth H], F [auth G], G [auth F], A, D [auth I], E [auth H], F [auth G], G [auth F], H [auth E], I [auth D], J [auth C], K [auth B]	Light-harvesting protein B-800/814 alpha chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex intracellular anatomical structure light-harvesting complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], O [auth e], P [auth d], Q [auth c], R [auth b]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], O [auth e], P [auth d], Q [auth c], R [auth b]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], O [auth e], P [auth d], Q [auth c], R [auth b]	IPR035889	Light-harvesting complex	Homologous Superfamily
B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], B [auth i], C [auth a], L [auth h], M [auth g], N [auth f], O [auth e], P [auth d], Q [auth c], R [auth b]	IPR002362	Light-harvesting protein B beta chain	Family
A, D [auth I], E [auth H], F [auth G], G [auth F], A, D [auth I], E [auth H], F [auth G], G [auth F], H [auth E], I [auth D], J [auth C], K [auth B]	IPR035889	Light-harvesting complex	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.