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 9LRE | pdb_00009lre

Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth G]Beta-Caspe9lreG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
C [auth E]Beta-Caspe9lreE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
BBeta-Caspe9lreB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
ABeta-Caspe9lreA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth R]Histamine H4 receptor,Genome polyprotein
D [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
C [auth E]scFv16---
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(i) subunit alpha-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth R]IPR008102Histamine H4 receptorFamily
E [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
E [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
E [auth R]IPR059138Picornavirus capsid VP1Domain
E [auth R]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth R]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth R]IPR003593AAA+ ATPase domainDomain
E [auth R]IPR003138Picornavirus coat protein VP4Family
E [auth R]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth R]IPR001676Picornavirus capsidDomain
E [auth R]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth R]IPR009017Green fluorescent proteinHomologous Superfamily
E [auth R]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth R]IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth R]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth R]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth R]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth R]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth R]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth R]IPR0025272B protein, picornavirusDomain
E [auth R]IPR014838Poliovirus 3A protein-likeDomain
E [auth R]IPR000786Green fluorescent protein, GFPFamily
E [auth R]IPR011584Green fluorescent protein-relatedFamily
E [auth R]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth R]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth R]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth G]IPR015898G-protein, gamma subunit-like domainDomain
D [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
D [auth G]IPR001770G-protein, gamma subunitFamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001632G-protein beta subunit-like, WD40 repeatsDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001019Guanine nucleotide binding protein, alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001408G-protein alpha subunit, group IFamily

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage