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 9LRD | pdb_00009lrd

Cryo-EM structure of the histamine H1 receptor-Gi protein complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CBeta-Caspe9lrdC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
D [auth E]Beta-Caspe9lrdE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
BBeta-Caspe9lrdB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
ABeta-Caspe9lrdA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
E [auth R]Histamine H1 receptor,Genome polyprotein
D [auth E]scFv16---
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(i) subunit alpha-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR015898G-protein, gamma subunit-like domainDomain
IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
IPR001770G-protein, gamma subunitFamily
E [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
E [auth R]IPR000921Histamine H1 receptorFamily
E [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
E [auth R]IPR002522Hepatitis C virus, Core protein, N-terminalDomain
E [auth R]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth R]IPR054175NS3 RNA helicase, C-terminal helical domainDomain
E [auth R]IPR009017Green fluorescent proteinHomologous Superfamily
E [auth R]IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
E [auth R]IPR038568Hepatitis C virus NS5A, 1B domain superfamilyHomologous Superfamily
E [auth R]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth R]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth R]IPR001650Helicase, C-terminal domain-likeDomain
E [auth R]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
E [auth R]IPR002868Hepatitis C virus, Non-structural 5a proteinDomain
E [auth R]IPR000786Green fluorescent protein, GFPFamily
E [auth R]IPR011584Green fluorescent protein-relatedFamily
E [auth R]IPR038170NS5A domain 1a superfamilyHomologous Superfamily
E [auth R]IPR002518Hepatitis C virus, Non-structural protein NS2Domain
E [auth R]IPR013192Hepatitis C virus, Non-structural 5a protein, domain 1aDomain
E [auth R]IPR002521Hepatitis C virus, Core protein, C-terminalDomain
E [auth R]IPR042209Hepatitis C virus non-structural protein NS2, N-terminal domainHomologous Superfamily
E [auth R]IPR000745Hepatitis C virus, Non-structural protein NS4aDomain
E [auth R]IPR042205Hepatitis C virus non-structural protein NS2, C-terminal domainHomologous Superfamily
E [auth R]IPR002166RNA dependent RNA polymerase, hepatitis C virusFamily
E [auth R]IPR002519Hepatitis C virus, Envelope glycoprotein E1Domain
E [auth R]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth R]IPR044896Hepatitis C virus core protein, chain A superfamilyHomologous Superfamily
E [auth R]IPR024350Hepatitus C virus, Non-structural 5a protein, C-terminalDomain
E [auth R]IPR013193Hepatitis C virus non-structural 5a, 1B domainDomain
E [auth R]IPR004109Hepatitis C virus, NS3 proteaseDomain
E [auth R]IPR049913Hepatitis C virus, p7 channelDomain
E [auth R]IPR002531Hepatitis C virus, Non-structural protein E2/NS1Domain
E [auth R]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth R]IPR001490Hepatitis C virus, Non-structural protein NS4bDomain
IPR019775WD40 repeat, conserved siteConserved Site
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001632G-protein beta subunit-like, WD40 repeatsDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001019Guanine nucleotide binding protein, alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001408G-protein alpha subunit, group IFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth R]:  P35367
:  P63096

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage