9LR9 | pdb_00009lr9

Local reconstruction of bovine adenovirus type 3 capsid

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O, P, Q, V	PF03955	Adenovirus hexon-associated protein (IX) (Adeno_PIX)	Adenovirus hexon-associated protein (IX)	-	Family
N, R	PF01310	Adenovirus hexon associated protein, protein VIII (Adeno_PVIII)	Adenovirus hexon associated protein, protein VIII	-	Family
K	PF02455	Hexon-associated protein (IIIa) (Hex_IIIa)	Hexon-associated protein (IIIa)	-	Family
C, DA [auth e], EA [auth f], U	PF02993	Minor capsid protein VI (MCPVI)	Minor capsid protein VI	-	Family
AA [auth b], B, BA [auth c], CA [auth d], L, AA [auth b], B, BA [auth c], CA [auth d], L, S, T, Y [auth Z], Z [auth a]	PF02993	Minor capsid protein VI (MCPVI)	Minor capsid protein VI	-	Family
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	PF01065	Hexon, adenovirus major coat protein, N-terminal domain (Adeno_hexon)	Hexon, adenovirus major coat protein, N-terminal domain	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ...	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices [1]. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.	Domain
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	PF02993	Minor capsid protein VI (MCPVI)	Minor capsid protein VI	-	Family
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	PF03678	Hexon, adenovirus major coat protein, C-terminal domain (Adeno_hexon_C)	Hexon, adenovirus major coat protein, C-terminal domain	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ...	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices [1]. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.	Domain
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	PF01686	Adenovirus penton base protein (Adeno_Penton_B)	Adenovirus penton base protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
IA [auth j]	Penton protein	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid
O, P, Q, V	PIX	hexon binding protein binding binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid virion component viral capsid, decoration
N, R	Pre-hexon-linking protein VIII	hexon binding protein binding binding	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
M	PV	DNA binding binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component
K	Pre-hexon-linking protein IIIa	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid virion component viral capsid, decoration
E	PX	DNA binding binding nucleic acid binding	-	cellular anatomical structure membrane viral nucleocapsid viral capsid virion component
C, DA [auth e], EA [auth f], U	Pre-histone-like nucleoprotein	DNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid virion component host intracellular membrane-bounded organelle host intracellular part host cell nucleus host cell nucleolus host cell nuclear part host intracellular organelle host cell part host intracellular region
AA [auth b], B, BA [auth c], CA [auth d], L, AA [auth b], B, BA [auth c], CA [auth d], L, S, T, Y [auth Z], Z [auth a]	PVI	-	biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host lysis of host organelle involved in viral entry into host cell biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid virion component host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	Hexon protein	structural molecule activity	biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
IA [auth j]	IPR002605	Adenovirus penton base protein	Family
O, P, Q, V	IPR005641	Hexon-associated protein IX	Family
N, R	IPR000646	Pre-hexon-linking protein VIII	Family
M	IPR005608	Adenovirus core-capsid bridging protein V	Family
K	IPR003479	Pre-hexon-linking protein IIIa	Family
K	IPR043053	Pre-hexon-linking protein IIIa, N-terminal	Homologous Superfamily
E	IPR008393	Adenovirus late L2 mu core	Family
C, DA [auth e], EA [auth f], U	IPR004912	Adenoviral core protein VII	Family
AA [auth b], B, BA [auth c], CA [auth d], L, AA [auth b], B, BA [auth c], CA [auth d], L, S, T, Y [auth Z], Z [auth a]	IPR004243	Minor capsid protein VI	Family
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	IPR044942	Adenovirus Pll, hexon, subdomain 2	Homologous Superfamily
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	IPR016110	Adenovirus Pll, hexon, subdomain 3	Homologous Superfamily
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	IPR016107	Adenovirus Pll, hexon, N-terminal	Domain
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	IPR016108	Adenovirus Pll, hexon, C-terminal	Domain
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, D, F, FA [auth g], G, A, D, F, FA [auth g], G, GA [auth h], H, HA [auth i], I, J, W [auth X], X [auth Y]	IPR037542	Adenovirus hexon protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.