9LQ5 | pdb_00009lq5

Cryo-EM structure of Apo type III-B CRISPR-Cas effector complex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I	PF03787	RAMP superfamily (RAMPs)	RAMP superfamily	-	Family
G, H	PF09701	CRISPR-associated protein (Cas_Cmr5) (Cas_Cmr5)	CRISPR-associated protein (Cas_Cmr5)	-	Family
D, E, F	PF03787	RAMP superfamily (RAMPs)	RAMP superfamily	-	Family
C	PF09700	CRISPR-associated protein (Cas_Cmr3) (Cas_Cmr3)	CRISPR-associated protein (Cas_Cmr3)	-	Family
B	PF22335	Cas10/Cmr2, second palm domain (Cas10-Cmr2_palm2)	Cas10/Cmr2, second palm domain	This entry represents the second palm domain of Cas10 subunit (named Csm1 in Type III-A and Cmr2 in III-B systems) from type III CRISPR-Cas systems [6]. This domain contains a conserved GGDD motif that is important for DNA polymerase activity [1-5]. ...	This entry represents the second palm domain of Cas10 subunit (named Csm1 in Type III-A and Cmr2 in III-B systems) from type III CRISPR-Cas systems [6]. This domain contains a conserved GGDD motif that is important for DNA polymerase activity [1-5].	Domain
B	PF12469	CRISPR-associated protein Cmr2, N-terminal (Cmr2_N)	CRISPR-associated protein Cmr2, N-terminal	This domain family is typically between 101 and 138 amino acids in length and it is found in subunit Crm2 of the CRISPR RNA-Cas protein complex (Cmr complex) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	crRNA	-	-	-
I	RAMP superfamily protein	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
G, H	CRISPR type III-B/RAMP module-associated protein Cmr5	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm
D, E, F	Type III-B CRISPR module RAMP protein Cmr4	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
C	CRISPR-associated protein Cmr3	-	-	-
B	Type III-B CRISPR-associated protein Cas10/Cmr2	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
A	Cmr1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR010172	CRISPR-associated protein, TM1791	Family
I	IPR005537	CRISPR type III-associated protein	Domain
G, H	IPR010160	CRISPR-associated protein, Cmr5	Family
G, H	IPR023101	AF1862-like domain superfamily	Homologous Superfamily
D, E, F	IPR013410	CRISPR-associated RAMP Cmr4	Family
D, E, F	IPR005537	CRISPR type III-associated protein	Domain
C	IPR019117	CRISPR-associated protein, Cmr3	Family
B	IPR024615	CRISPR-associated protein Cmr2, N-terminal	Domain
B	IPR038242	CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster	Homologous Superfamily
B	IPR013407	CRISPR-associated protein Cmr2	Family
B	IPR054767	Cas10/Cmr2, second palm domain	Domain
B	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.