9LGJ | pdb_00009lgj

Cryo-EM structure of a designed AAV2-based vector


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth AB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YA [auth ZA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XA [auth YA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WA [auth XA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VA [auth WA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
UA [auth VA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TA [auth UA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SA [auth TA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RA [auth SA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QA [auth RA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PA [auth QA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OA [auth PA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NA [auth OA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MA [auth NA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LA [auth MA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KA [auth LA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JA [auth KA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
IA [auth JA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HB [auth IB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HA [auth IA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GB [auth HB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GA [auth HA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FB [auth GB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FA [auth GA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EB [auth FB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EA [auth FA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DB [auth EB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DA [auth EA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CB [auth DB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CA [auth DA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BB [auth CB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BA [auth CA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AB [auth BB]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AA [auth BA]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth AB]TCL1_MTCP1e9lgjAB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
Z [auth AA]TCL1_MTCP1e9lgjAA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
YA [auth ZA]TCL1_MTCP1e9lgjZA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
Y [auth Z]TCL1_MTCP1e9lgjZ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
XA [auth YA]TCL1_MTCP1e9lgjYA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
X [auth Y]TCL1_MTCP1e9lgjY1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
WA [auth XA]TCL1_MTCP1e9lgjXA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
W [auth X]TCL1_MTCP1e9lgjX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
VA [auth WA]TCL1_MTCP1e9lgjWA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
V [auth W]TCL1_MTCP1e9lgjW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
UA [auth VA]TCL1_MTCP1e9lgjVA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
U [auth V]TCL1_MTCP1e9lgjV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
TA [auth UA]TCL1_MTCP1e9lgjUA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
TTCL1_MTCP1e9lgjT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
SA [auth TA]TCL1_MTCP1e9lgjTA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
STCL1_MTCP1e9lgjS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
RA [auth SA]TCL1_MTCP1e9lgjSA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
RTCL1_MTCP1e9lgjR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
QA [auth RA]TCL1_MTCP1e9lgjRA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
QTCL1_MTCP1e9lgjQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
PA [auth QA]TCL1_MTCP1e9lgjQA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
PTCL1_MTCP1e9lgjP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
OA [auth PA]TCL1_MTCP1e9lgjPA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
OTCL1_MTCP1e9lgjO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
NA [auth OA]TCL1_MTCP1e9lgjOA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
NTCL1_MTCP1e9lgjN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
MA [auth NA]TCL1_MTCP1e9lgjNA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
MTCL1_MTCP1e9lgjM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
LA [auth MA]TCL1_MTCP1e9lgjMA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
LTCL1_MTCP1e9lgjL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
KA [auth LA]TCL1_MTCP1e9lgjLA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
KTCL1_MTCP1e9lgjK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
JA [auth KA]TCL1_MTCP1e9lgjKA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
JTCL1_MTCP1e9lgjJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
IA [auth JA]TCL1_MTCP1e9lgjJA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
ITCL1_MTCP1e9lgjI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
HB [auth IB]TCL1_MTCP1e9lgjIB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
HA [auth IA]TCL1_MTCP1e9lgjIA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
HTCL1_MTCP1e9lgjH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
GB [auth HB]TCL1_MTCP1e9lgjHB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
GA [auth HA]TCL1_MTCP1e9lgjHA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
GTCL1_MTCP1e9lgjG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
FB [auth GB]TCL1_MTCP1e9lgjGB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
FA [auth GA]TCL1_MTCP1e9lgjGA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
FTCL1_MTCP1e9lgjF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
EB [auth FB]TCL1_MTCP1e9lgjFB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
EA [auth FA]TCL1_MTCP1e9lgjFA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
ETCL1_MTCP1e9lgjE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
DB [auth EB]TCL1_MTCP1e9lgjEB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
DA [auth EA]TCL1_MTCP1e9lgjEA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
DTCL1_MTCP1e9lgjD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
CB [auth DB]TCL1_MTCP1e9lgjDB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
CA [auth DA]TCL1_MTCP1e9lgjDA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
CTCL1_MTCP1e9lgjC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
BB [auth CB]TCL1_MTCP1e9lgjCB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
BA [auth CA]TCL1_MTCP1e9lgjCA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
BTCL1_MTCP1e9lgjB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
AB [auth BB]TCL1_MTCP1e9lgjBB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
AA [auth BA]TCL1_MTCP1e9lgjBA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: TCL1_MTCP1ECOD (v295.2)
AMem_transe9lgjA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Mem_transECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily