9LE7 | pdb_00009le7

Coordinates of Cryo-EM structure of the Arabidopsis thaliana C4S4M4-type PSII supercomplex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8104017 3000343 SCOP2B (2022-06-29)
UA [auth 0]SCOP2B SuperfamilyChlorophyll a-b binding protein 8104017 3000343 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
PB [auth BE]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
W [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
XA [auth v]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
QB [auth BG]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
X [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
YA [auth 2]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
RB [auth BH]SCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
Y [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
ZA [auth 3]SCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
AB [auth 4]SCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
SB [auth BI]SCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
Z [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
AA [auth g]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
BB [auth Au]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
FC [auth Ba]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
GA [auth n]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
HB [auth A2]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
MA [auth y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
NB [auth BB]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
O [auth N]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
TB [auth BJ]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
U [auth Y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
ZB [auth BQ]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076980 3000343 SCOP2B (2022-06-29)
BA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
CB [auth Av]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
UB [auth BK]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
CA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
DB [auth Aw]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
VB [auth BL]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
DA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
EB [auth Ay]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
WB [auth BN]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
EA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
FB [auth Az]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
XB [auth BO]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
FA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
GB [auth A1]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
YB [auth BP]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
AC [auth BV]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
HA [auth s]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
IB [auth A6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
P [auth S]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
GC [auth Bb]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
NA [auth z]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
OB [auth BC]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
V [auth Z]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
HC [auth R]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
JC [auth BD]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
OA [auth A]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
QA [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
IC [auth 1]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
KC [auth BF]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
PA [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
RA [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
LC [auth BU]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099114 3000343 SCOP2B (2022-06-29)
SA [auth r]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099114 3000343 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 5],
C [auth 7],
TA [auth 9],
VA [auth AA]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
B [auth 6],
UA [auth 0]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
D [auth 8],
WA [auth AB]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
E [auth B],
PB [auth BE],
W [auth b],
XA [auth v]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
BA [auth h],
CB [auth Av],
J [auth H],
UB [auth BK]		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
CA [auth i],
DB [auth Aw],
K [auth I],
VB [auth BL]		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
DA [auth k],
EB [auth Ay],
L [auth K],
WB [auth BN]		PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
FA [auth m],
GB [auth A1],
N [auth M],
YB [auth BP]		PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
AC [auth BV],
HA [auth s],
IB [auth A6],
P [auth S]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
BC [auth BW],
IA [auth t],
JB [auth A7],
Q [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
DC [auth BY],
KA [auth w],
LB [auth A0],
S [auth W]		PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
EC [auth BZ],
LA [auth x],
MB [auth BA],
T [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
GC [auth Bb],
NA [auth z],
OB [auth BC],
V [auth Z]		PF01737YCF9 (Ycf9)YCF9- Family
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
IC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
LC [auth BU],
SA [auth r]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 5],
C [auth 7],
TA [auth 9],
VA [auth AA]		Chlorophyll a-b binding protein, chloroplastic
B [auth 6],
UA [auth 0]		Chlorophyll a-b binding protein 3, chloroplastic
D [auth 8],
WA [auth AB]		Chlorophyll a-b binding protein, chloroplastic
E [auth B],
PB [auth BE],
W [auth b],
XA [auth v]		Photosystem II CP47 reaction center protein
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		Photosystem II D2 protein
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		Cytochrome b559 subunit alpha
AB [auth 4],
H [auth F],
SB [auth BI],
Z [auth f]		Cytochrome b559 subunit beta
Chlorophyll a-b binding protein 1, chloroplastic
BA [auth h],
CB [auth Av],
J [auth H],
UB [auth BK]		Photosystem II reaction center protein H
CA [auth i],
DB [auth Aw],
K [auth I],
VB [auth BL]		Photosystem II reaction center protein I-
DA [auth k],
EB [auth Ay],
L [auth K],
WB [auth BN]		Photosystem II reaction center protein K-
EA [auth l],
FB [auth Az],
M [auth L],
XB [auth BO]		Photosystem II reaction center protein L-
FA [auth m],
GB [auth A1],
N [auth M],
YB [auth BP]		Photosystem II reaction center protein M-
AC [auth BV],
HA [auth s],
IB [auth A6],
P [auth S]		Chlorophyll a-b binding protein CP26, chloroplastic
BC [auth BW],
IA [auth t],
JB [auth A7],
Q [auth T]		Photosystem II reaction center protein T-
CC [auth BX],
JA [auth u],
KB [auth A8],
R [auth U]		Photosystem II 5 kDa protein, chloroplastic-
DC [auth BY],
KA [auth w],
LB [auth A0],
S [auth W]		Photosystem II reaction center W protein, chloroplastic-
EC [auth BZ],
LA [auth x],
MB [auth BA],
T [auth X]		(thale cress) hypothetical protein-
GC [auth Bb],
NA [auth z],
OB [auth BC],
V [auth Z]		Photosystem II reaction center protein Z-
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		Photosystem II protein D1
IC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		Photosystem II CP43 reaction center protein
LC [auth BU],
SA [auth r]		Chlorophyll a-b binding protein CP29.1, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 5],
C [auth 7],
TA [auth 9],
VA [auth AA]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
A [auth 5],
C [auth 7],
TA [auth 9],
VA [auth AA]		IPR022796Chlorophyll A-B binding proteinFamily
B [auth 6],
UA [auth 0]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
B [auth 6],
UA [auth 0]		IPR022796Chlorophyll A-B binding proteinFamily
D [auth 8],
WA [auth AB]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
D [auth 8],
WA [auth AB]		IPR022796Chlorophyll A-B binding proteinFamily
E [auth B],
PB [auth BE],
W [auth b],
XA [auth v]		IPR017486Photosystem II CP47 reaction centre proteinFamily
E [auth B],
PB [auth BE],
W [auth b],
XA [auth v]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
E [auth B],
PB [auth BE],
W [auth b],
XA [auth v]		IPR000932Photosystem antenna protein-likeFamily
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		IPR005868Photosystem II D2Family
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		IPR000484Photosynthetic reaction centre, L/MFamily
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
F [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		IPR055266Photosystem II protein D1/D2Family
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
G [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AB [auth 4],
H [auth F],
SB [auth BI],
Z [auth f]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
AB [auth 4],
H [auth F],
SB [auth BI],
Z [auth f]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
AB [auth 4],
H [auth F],
SB [auth BI],
Z [auth f]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
BA [auth h],
CB [auth Av],
J [auth H],
UB [auth BK]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
BA [auth h],
CB [auth Av],
J [auth H],
UB [auth BK]		IPR001056Photosystem II reaction centre protein HFamily
CA [auth i],
DB [auth Aw],
K [auth I],
VB [auth BL]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
CA [auth i],
DB [auth Aw],
K [auth I],
VB [auth BL]		IPR003686Photosystem II PsbIFamily
DA [auth k],
EB [auth Ay],
L [auth K],
WB [auth BN]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
DA [auth k],
EB [auth Ay],
L [auth K],
WB [auth BN]		IPR003687Photosystem II PsbKFamily
EA [auth l],
FB [auth Az],
M [auth L],
XB [auth BO]		IPR003372Photosystem II PsbLFamily
EA [auth l],
FB [auth Az],
M [auth L],
XB [auth BO]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
FA [auth m],
GB [auth A1],
N [auth M],
YB [auth BP]		IPR007826Photosystem II PsbMFamily
FA [auth m],
GB [auth A1],
N [auth M],
YB [auth BP]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
AC [auth BV],
HA [auth s],
IB [auth A6],
P [auth S]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AC [auth BV],
HA [auth s],
IB [auth A6],
P [auth S]		IPR022796Chlorophyll A-B binding proteinFamily
BC [auth BW],
IA [auth t],
JB [auth A7],
Q [auth T]		IPR001743Photosystem II PsbTFamily
BC [auth BW],
IA [auth t],
JB [auth A7],
Q [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
CC [auth BX],
JA [auth u],
KB [auth A8],
R [auth U]		IPR040296Photosystem II 5kDa protein, chloroplasticFamily
DC [auth BY],
KA [auth w],
LB [auth A0],
S [auth W]		IPR009806Photosystem II PsbW, class 2Family
EC [auth BZ],
LA [auth x],
MB [auth BA],
T [auth X]		IPR009518Photosystem II PsbXFamily
EC [auth BZ],
LA [auth x],
MB [auth BA],
T [auth X]		IPR005024Snf7 familyFamily
GC [auth Bb],
NA [auth z],
OB [auth BC],
V [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
GC [auth Bb],
NA [auth z],
OB [auth BC],
V [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		IPR005867Photosystem II protein D1Family
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		IPR055266Photosystem II protein D1/D2Family
IC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		IPR000932Photosystem antenna protein-likeFamily
IC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
IC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
LC [auth BU],
SA [auth r]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
LC [auth BU],
SA [auth r]		IPR022796Chlorophyll A-B binding proteinFamily