9LC2 | pdb_00009lc2

Crystal Structure of NFIA in Complex with DNA Containing the TGGCA(N3)TGCCA Motif

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, E	DNA (5'-D(APGPTPTPGPGPCPAPAPGPAPTPGPCPCPAPTPC)-3')	-	-	-
D, F	DNA (5'-D(GPAPTPGPGPCPAPTPCPTPTPGPCPCPAPAPCPT)-3')	-	-	-
A, B	Nuclear factor 1 A-type	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific transcription factor binding protein binding DNA-binding transcription factor binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development nucleobase-containing compound metabolic process DNA replication metabolic process cellular process developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular developmental process neuron fate commitment nervous system development cell fate specification generation of neurons neurogenesis neuron differentiation cell differentiation neuron fate specification cell fate commitment cellular response to stimulus cellular response to BMP stimulus regulation of biological process cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process cellular response to growth factor stimulus cell surface receptor signaling pathway response to stimulus signaling response to endogenous stimulus biological regulation cell communication cellular response to endogenous stimulus response to BMP transforming growth factor beta receptor superfamily signaling pathway signal transduction response to growth factor BMP signaling pathway enzyme-linked receptor protein signaling pathway sensory organ development eye development retina development in camera-type eye visual system development camera-type eye development sensory system development viral genome replication viral process viral life cycle glial cell fate specification gliogenesis glial cell differentiation glial cell fate commitment mitotic nuclear division organelle fission cell cycle phase transition exit from mitosis mitotic cell cycle cellular component organization nuclear division organelle organization mitotic cell cycle process cell cycle cellular component organization or biogenesis cell cycle process mitotic cell cycle phase transition tube development ureter development renal system development anatomical structure morphogenesis limb development appendage development appendage morphogenesis limb morphogenesis biosynthetic process gene expression macromolecule biosynthetic process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process cell morphogenesis cell population proliferation neural precursor cell proliferation response to stress response to wounding developmental maturation synapse maturation cell junction organization synapse organization transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process glial cell proliferation	cellular anatomical structure cell junction membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle cellular anatomical structure cell junction membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR019548	CTF transcription factor/nuclear factor 1, N-terminal	Domain
A, B	IPR020604	CTF transcription factor/nuclear factor 1, DNA-binding domain	Domain
A, B	IPR003619	MAD homology 1, Dwarfin-type	Domain
A, B	IPR019739	CTF transcription factor/nuclear factor 1, conserved site	Conserved Site
A, B	IPR000647	CTF transcription factor/nuclear factor 1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q12857	chromosome 1p32-p31 deletion syndrome pancreatic ductal adenocarcinoma spina bifida acute myeloid leukemia attention deficit hyperactivity disorder, inattentive type breast cancer invasive ductal breast carcinoma malignant ependymoma osteosarcoma Pick disease subependymal giant cell astrocytoma adrenal cortex carcinoma atypical teratoid rhabdoid tumor breast carcinoma ductal breast carcinoma in situ chromosome 1p32-p31 deletion syndrome pancreatic ductal adenocarcinoma spina bifida acute myeloid leukemia attention deficit hyperactivity disorder, inattentive type breast cancer invasive ductal breast carcinoma malignant ependymoma osteosarcoma Pick disease subependymal giant cell astrocytoma adrenal cortex carcinoma atypical teratoid rhabdoid tumor breast carcinoma ductal breast carcinoma in situ lung adenocarcinoma medulloblastoma ovarian cancer rheumatoid arthritis tuberculosis astrocytic tumor BRAIN MALFORMATIONS WITH OR WITHOUT URINARY TRACT DEFECTS celiac disease intellectual disability macrocephaly/megalencephaly syndrome, autosomal recessive non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.