9KTZ | pdb_00009ktz

Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, G355R

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	Cytotoxic granule associated RNA binding protein TIA1	mRNA 3'-UTR binding RNA binding binding nucleic acid binding mRNA binding mRNA 3'-UTR AU-rich region binding poly(A) binding poly-purine tract binding single-stranded RNA binding	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process positive regulation of epithelial cell apoptotic process positive regulation of programmed cell death regulation of epithelial cell apoptotic process regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process epithelial cell apoptotic process apoptotic process programmed cell death positive regulation of cellular process alternative mRNA splicing, via spliceosome RNA metabolic process regulation of mRNA splicing, via spliceosome mRNA processing nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process regulation of RNA metabolic process RNA processing regulation of nucleobase-containing compound metabolic process regulation of mRNA processing RNA splicing nucleobase-containing compound biosynthetic process regulation of RNA splicing mRNA metabolic process nucleic acid metabolic process RNA splicing, via transesterification reactions regulation of alternative mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile regulation of mRNA metabolic process multicellular organismal process cytokine production regulation of cytokine production regulation of multicellular organismal process negative regulation of cytokine production negative regulation of multicellular organismal process cellular component biogenesis cellular component organization organelle organization cellular component assembly stress granule assembly organelle assembly membraneless organelle assembly cellular component organization or biogenesis localization protein localization to cytoplasmic stress granule protein localization to organelle macromolecule localization intracellular protein localization	intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol membrane-bounded organelle nucleus intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen nuclear stress granule nuclear body nuclear ribonucleoprotein granule protein-containing complex ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR034827	TIA-1, RNA recognition motif 1	Domain
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR034496	TIAR, RNA recognition motif 3	Domain
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR003954	RNA recognition motif domain, eukaryotic-type	Domain
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR000504	RNA recognition motif domain	Domain
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR034830	TIA-1, RNA recognition motif 2	Domain
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	IPR035979	RNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth E], C [auth A], D, E [auth C], A [auth B], B [auth E], C [auth A], D, E [auth C], F	Pharos: P31483	amyotrophic lateral sclerosis Welander distal myopathy, Swedish type distal myopathy, Welander type nasopharyngeal carcinoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Pick disease adenoma astrocytic tumor dermatomyositis Gaucher disease juvenile dermatomyositis lung cancer malignant glioma neurodegenerative disease amyotrophic lateral sclerosis Welander distal myopathy, Swedish type distal myopathy, Welander type nasopharyngeal carcinoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Pick disease adenoma astrocytic tumor dermatomyositis Gaucher disease juvenile dermatomyositis lung cancer malignant glioma neurodegenerative disease ovarian cancer pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor atypical teratoid rhabdoid tumor distal myopathy glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia progressive supranuclear palsy arthrogryposis invasive ductal breast carcinoma lung adenocarcinoma malignant ependymoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.