9KQR | pdb_00009kqr

Cryo-EM Structure of Mature Semliki Forest Virus

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth j]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
C [auth j]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth a]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
F [auth a]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
I [auth d]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
I [auth d]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
L [auth g]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
L [auth g]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth j],
F [auth a],
I [auth d],
L [auth g]		Spike glycoprotein E1
B [auth l],
E [auth c],
H [auth f],
K [auth i]		Capsid protein
A [auth k],
D [auth b],
G [auth e],
J [auth h]		Envelope glycoprotein E2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR000936Alphavirus E2 glycoproteinFamily
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR000930Peptidase S3, togavirinDomain
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR002548Alphavirus E1 glycoproteinDomain
C [auth j],
F [auth a],
I [auth d],
L [auth g]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR002533Alphavirus E3 spike glycoproteinDomain
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR000936Alphavirus E2 glycoproteinFamily
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR000930Peptidase S3, togavirinDomain
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR002548Alphavirus E1 glycoproteinDomain
B [auth l],
E [auth c],
H [auth f],
K [auth i]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR002533Alphavirus E3 spike glycoproteinDomain
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR000936Alphavirus E2 glycoproteinFamily
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR000930Peptidase S3, togavirinDomain
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR002548Alphavirus E1 glycoproteinDomain
A [auth k],
D [auth b],
G [auth e],
J [auth h]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD