9KFK | pdb_00009kfk

Cryo-EM structure of the relaxin-3-bound human relaxin family peptide receptor 4 (RXFP4)-Gi complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth G]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070796 3001771 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth T]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
B [auth I]PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain
A [auth G]PF00631GGL domain (G-gamma)GGL domainG-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2] ...G-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2]. G-gamma likely shares a common origin with the helical N-terminal unit of G-beta [2]. All organisms that posses a G-beta possess a G-gamma [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth A]Relaxin-3 A chain -
F [auth B]Relaxin-3 B chain -
E [auth T]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
D [auth S]scFv16---
C [auth R]Soluble cytochrome b562,Relaxin-3 receptor 2,LgBiT
B [auth I]Guanine nucleotide-binding protein G(i) subunit alpha-2
A [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth A]IPR051777Insulin-like_neuropeptide_ligandsFamily
G [auth A]IPR022352Insulin/IGF/relaxinFamily
G [auth A]IPR022353Insulin, conserved siteConserved Site
G [auth A]IPR036438Insulin-like superfamilyHomologous Superfamily
G [auth A]IPR016179Insulin-likeDomain
F [auth B]IPR051777Insulin-like_neuropeptide_ligandsFamily
F [auth B]IPR022352Insulin/IGF/relaxinFamily
F [auth B]IPR022353Insulin, conserved siteConserved Site
F [auth B]IPR036438Insulin-like superfamilyHomologous Superfamily
F [auth B]IPR016179Insulin-likeDomain
E [auth T]IPR019775WD40 repeat, conserved siteConserved Site
E [auth T]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
E [auth T]IPR001632G-protein beta subunit-like, WD40 repeatsDomain
E [auth T]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth T]IPR016346G-protein subunit beta 1-5Family
E [auth T]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth T]IPR001680WD40 repeatRepeat
C [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
C [auth R]IPR050119C-C chemokine receptor type 1-9-likeFamily
C [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
C [auth R]IPR000248Angiotensin II receptor familyFamily
B [auth I]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
B [auth I]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
B [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth I]IPR001408G-protein alpha subunit, group IFamily
A [auth G]IPR015898G-protein, gamma subunit-like domainDomain
A [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
A [auth G]IPR001770G-protein, gamma subunitFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
G [auth A]PharosQ8WXF3
F [auth B]PharosQ8WXF3
E [auth T]PharosP62873
C [auth R]PharosQ8TDU9
B [auth I]PharosP04899