Annotations: 9K9X

Crystal structure of bicyclogermacrene synthase

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ClpB_D2-small	e9k9xB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
A	ClpB_D2-small	e9k9xA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Bicyclogermacrene synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding carbon-oxygen lyase activity, acting on phosphates sesquiterpene synthase activity terpene synthase activity lyase activity catalytic activity carbon-oxygen lyase activity	diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process sesquiterpene biosynthetic process terpene metabolic process diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process sesquiterpene biosynthetic process terpene metabolic process sesquiterpene metabolic process hydrocarbon metabolic process terpene biosynthetic process bicyclogermacrene biosynthetic process hydrocarbon biosynthetic process lipid catabolic process catabolic process isoprenoid catabolic process phospholipid catabolic process organophosphate catabolic process farnesyl diphosphate catabolic process farnesyl diphosphate metabolic process phospholipid metabolic process terpenoid catabolic process organophosphate metabolic process phosphorus metabolic process	-
A	Bicyclogermacrene synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding carbon-oxygen lyase activity, acting on phosphates sesquiterpene synthase activity terpene synthase activity lyase activity catalytic activity carbon-oxygen lyase activity	diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process sesquiterpene biosynthetic process terpene metabolic process diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process sesquiterpene biosynthetic process terpene metabolic process sesquiterpene metabolic process hydrocarbon metabolic process terpene biosynthetic process bicyclogermacrene biosynthetic process hydrocarbon biosynthetic process lipid catabolic process catabolic process isoprenoid catabolic process phospholipid catabolic process organophosphate catabolic process farnesyl diphosphate catabolic process farnesyl diphosphate metabolic process phospholipid metabolic process terpenoid catabolic process organophosphate metabolic process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
B	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
B	IPR034741	Terpene cyclase-like 1, C-terminal domain	Domain
B	IPR044814	Terpene cyclases, class 1, plant	Family
B	IPR001906	Terpene synthase, N-terminal domain	Domain
B	IPR005630	Terpene synthase-like, metal-binding domain	Domain
B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
B	IPR050148	Terpene synthase-like	Family
A	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
A	IPR034741	Terpene cyclase-like 1, C-terminal domain	Domain
A	IPR044814	Terpene cyclases, class 1, plant	Family
A	IPR001906	Terpene synthase, N-terminal domain	Domain
A	IPR005630	Terpene synthase-like, metal-binding domain	Domain
A	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A	IPR050148	Terpene synthase-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9K9X | pdb_00009k9x

Crystal structure of bicyclogermacrene synthase

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage