9K3M | pdb_00009k3m

The structure of Microviridae PJNS001

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZE [auth AF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
ZB [auth AC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
YD [auth ZD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
YA [auth ZA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
XF [auth YF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
XC [auth YC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
X [auth Y]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
WE [auth XE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
WB [auth XB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
VD [auth WD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
VA [auth WA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
UF [auth VF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
UC [auth VC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
U [auth V]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
TE [auth UE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
TB [auth UB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
SD [auth TD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
SA [auth TA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
RF [auth SF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
RC [auth SC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
QE [auth RE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
QB [auth RB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
PD [auth QD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
PA [auth QA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
OF [auth PF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
OC [auth PC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
NE [auth OE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
NB [auth OB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
MD [auth ND]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
MA [auth NA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
LF [auth MF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
LC [auth MC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
KE [auth LE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
KB [auth LB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
JD [auth KD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
JA [auth KA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
IF [auth JF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
IC [auth JC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
HE [auth IE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
HB [auth IB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
GD [auth HD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
GA [auth HA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
FF [auth GF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
FC [auth GC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
EE [auth FE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
EB [auth FB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
DD [auth ED]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
DA [auth EA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
CF [auth DF]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
CC [auth DC]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
C [auth J]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
BE [auth CE]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
BB [auth CB]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
AD [auth BD]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)
AA [auth BA]	SCOP2B Superfamily	phiX174 DNA-binding protein J-like	8053968	3002257	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth BA], AD [auth BD], BB [auth CB], BE [auth CE], C [auth J], AA [auth BA], AD [auth BD], BB [auth CB], BE [auth CE], C [auth J], CC [auth DC], CF [auth DF], DA [auth EA], DD [auth ED], EB [auth FB], EE [auth FE], F [auth C], FC [auth GC], FF [auth GF], GA [auth HA], GD [auth HD], HB [auth IB], HE [auth IE], I [auth H], IC [auth JC], IF [auth JF], JA [auth KA], JD [auth KD], KB [auth LB], KE [auth LE], L, LC [auth MC], LF [auth MF], MA [auth NA], MD [auth ND], NB [auth OB], NE [auth OE], O, OC [auth PC], OF [auth PF], PA [auth QA], PD [auth QD], QB [auth RB], QE [auth RE], R, RC [auth SC], RF [auth SF], SA [auth TA], SD [auth TD], TB [auth UB], TE [auth UE], U [auth V], UC [auth VC], UF [auth VF], VA [auth WA], VD [auth WD], WB [auth XB], WE [auth XE], X [auth Y], XC [auth YC], XF [auth YF], YA [auth ZA], YD [auth ZD], ZB [auth AC], ZE [auth AF]	PF04726	Microvirus J protein (Microvir_J)	Microvirus J protein	-	Family
A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], CB [auth DB], CE [auth DE], D [auth A], DC [auth EC], DF [auth EF], EA [auth FA], ED [auth FD], FB [auth GB], FE [auth GE], G [auth D], GC [auth HC], GF [auth HF], HA [auth IA], HD [auth ID], IB [auth JB], IE [auth JE], J [auth I], JC [auth KC], JF [auth KF], KA [auth LA], KD [auth LD], LB [auth MB], LE [auth ME], M, MC [auth NC], MF [auth NF], NA [auth OA], ND [auth OD], OB [auth PB], OE [auth PE], P, PC [auth QC], PF [auth QF], QA [auth RA], QD [auth RD], RB [auth SB], RE [auth SE], S, SC [auth TC], SF [auth TF], TA [auth UA], TD [auth UD], UB [auth VB], UE [auth VE], V [auth W], VC [auth WC], VF [auth WF], WA [auth XA], WD [auth XD], XB [auth YB], XE [auth YE], Y [auth Z], YC [auth ZC], ZA [auth AB], ZD [auth AE]	PF02305	Capsid protein (F protein) (Phage_F)	Capsid protein (F protein)	This is a family of proteins from single-stranded DNA bacteriophages. Protein F is the major capsid component, sixty copies of which are found in the virion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth BA], AD [auth BD], BB [auth CB], BE [auth CE], C [auth J], AA [auth BA], AD [auth BD], BB [auth CB], BE [auth CE], C [auth J], CC [auth DC], CF [auth DF], DA [auth EA], DD [auth ED], EB [auth FB], EE [auth FE], F [auth C], FC [auth GC], FF [auth GF], GA [auth HA], GD [auth HD], HB [auth IB], HE [auth IE], I [auth H], IC [auth JC], IF [auth JF], JA [auth KA], JD [auth KD], KB [auth LB], KE [auth LE], L, LC [auth MC], LF [auth MF], MA [auth NA], MD [auth ND], NB [auth OB], NE [auth OE], O, OC [auth PC], OF [auth PF], PA [auth QA], PD [auth QD], QB [auth RB], QE [auth RE], R, RC [auth SC], RF [auth SF], SA [auth TA], SD [auth TD], TB [auth UB], TE [auth UE], U [auth V], UC [auth VC], UF [auth VF], VA [auth WA], VD [auth WD], WB [auth XB], WE [auth XE], X [auth Y], XC [auth YC], XF [auth YF], YA [auth ZA], YD [auth ZD], ZB [auth AC], ZE [auth AF]	DNA-binding protein J	DNA binding binding nucleic acid binding	-	viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
AB [auth BB], AE [auth BE], B [auth G], BC [auth CC], BF [auth CF], AB [auth BB], AE [auth BE], B [auth G], BC [auth CC], BF [auth CF], CA [auth DA], CD [auth DD], DB [auth EB], DE [auth EE], E [auth B], EC [auth FC], EF [auth FF], FA [auth GA], FD [auth GD], GB [auth HB], GE [auth HE], H [auth E], HC [auth IC], HF [auth IF], IA [auth JA], ID [auth JD], JB [auth KB], JE [auth KE], K, KC [auth LC], KF [auth LF], LA [auth MA], LD [auth MD], MB [auth NB], ME [auth NE], N, NC [auth OC], NF [auth OF], OA [auth PA], OD [auth PD], PB [auth QB], PE [auth QE], Q, QC [auth RC], QF [auth RF], RA [auth SA], RD [auth SD], SB [auth TB], SE [auth TE], T, TC [auth UC], TF [auth UF], UA [auth VA], UD [auth VD], VB [auth WB], VE [auth WE], W [auth X], WC [auth XC], WF [auth XF], XA [auth YA], XD [auth YD], YB [auth ZB], YE [auth ZE], Z [auth AA], ZC [auth AD]	Major spike protein G	-	-	-
A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], CB [auth DB], CE [auth DE], D [auth A], DC [auth EC], DF [auth EF], EA [auth FA], ED [auth FD], FB [auth GB], FE [auth GE], G [auth D], GC [auth HC], GF [auth HF], HA [auth IA], HD [auth ID], IB [auth JB], IE [auth JE], J [auth I], JC [auth KC], JF [auth KF], KA [auth LA], KD [auth LD], LB [auth MB], LE [auth ME], M, MC [auth NC], MF [auth NF], NA [auth OA], ND [auth OD], OB [auth PB], OE [auth PE], P, PC [auth QC], PF [auth QF], QA [auth RA], QD [auth RD], RB [auth SB], RE [auth SE], S, SC [auth TC], SF [auth TF], TA [auth UA], TD [auth UD], UB [auth VB], UE [auth VE], V [auth W], VC [auth WC], VF [auth WF], WA [auth XA], WD [auth XD], XB [auth YB], XE [auth YE], Y [auth Z], YC [auth ZC], ZA [auth AB], ZD [auth AE]	Capsid protein F	structural molecule activity	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth BA], AD [auth BD], BB [auth CB], BE [auth CE], C [auth J], AA [auth BA], AD [auth BD], BB [auth CB], BE [auth CE], C [auth J], CC [auth DC], CF [auth DF], DA [auth EA], DD [auth ED], EB [auth FB], EE [auth FE], F [auth C], FC [auth GC], FF [auth GF], GA [auth HA], GD [auth HD], HB [auth IB], HE [auth IE], I [auth H], IC [auth JC], IF [auth JF], JA [auth KA], JD [auth KD], KB [auth LB], KE [auth LE], L, LC [auth MC], LF [auth MF], MA [auth NA], MD [auth ND], NB [auth OB], NE [auth OE], O, OC [auth PC], OF [auth PF], PA [auth QA], PD [auth QD], QB [auth RB], QE [auth RE], R, RC [auth SC], RF [auth SF], SA [auth TA], SD [auth TD], TB [auth UB], TE [auth UE], U [auth V], UC [auth VC], UF [auth VF], VA [auth WA], VD [auth WD], WB [auth XB], WE [auth XE], X [auth Y], XC [auth YC], XF [auth YF], YA [auth ZA], YD [auth ZD], ZB [auth AC], ZE [auth AF]	IPR006815	Microvirus J protein-like	Family
A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], CB [auth DB], CE [auth DE], D [auth A], DC [auth EC], DF [auth EF], EA [auth FA], ED [auth FD], FB [auth GB], FE [auth GE], G [auth D], GC [auth HC], GF [auth HF], HA [auth IA], HD [auth ID], IB [auth JB], IE [auth JE], J [auth I], JC [auth KC], JF [auth KF], KA [auth LA], KD [auth LD], LB [auth MB], LE [auth ME], M, MC [auth NC], MF [auth NF], NA [auth OA], ND [auth OD], OB [auth PB], OE [auth PE], P, PC [auth QC], PF [auth QF], QA [auth RA], QD [auth RD], RB [auth SB], RE [auth SE], S, SC [auth TC], SF [auth TF], TA [auth UA], TD [auth UD], UB [auth VB], UE [auth VE], V [auth W], VC [auth WC], VF [auth WF], WA [auth XA], WD [auth XD], XB [auth YB], XE [auth YE], Y [auth Z], YC [auth ZC], ZA [auth AB], ZD [auth AE]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], CB [auth DB], CE [auth DE], D [auth A], DC [auth EC], DF [auth EF], EA [auth FA], ED [auth FD], FB [auth GB], FE [auth GE], G [auth D], GC [auth HC], GF [auth HF], HA [auth IA], HD [auth ID], IB [auth JB], IE [auth JE], J [auth I], JC [auth KC], JF [auth KF], KA [auth LA], KD [auth LD], LB [auth MB], LE [auth ME], M, MC [auth NC], MF [auth NF], NA [auth OA], ND [auth OD], OB [auth PB], OE [auth PE], P, PC [auth QC], PF [auth QF], QA [auth RA], QD [auth RD], RB [auth SB], RE [auth SE], S, SC [auth TC], SF [auth TF], TA [auth UA], TD [auth UD], UB [auth VB], UE [auth VE], V [auth W], VC [auth WC], VF [auth WF], WA [auth XA], WD [auth XD], XB [auth YB], XE [auth YE], Y [auth Z], YC [auth ZC], ZA [auth AB], ZD [auth AE]	IPR003514	Microviridae F protein	Family
A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], A [auth F], AC [auth BC], AF [auth BF], BA [auth CA], BD [auth CD], CB [auth DB], CE [auth DE], D [auth A], DC [auth EC], DF [auth EF], EA [auth FA], ED [auth FD], FB [auth GB], FE [auth GE], G [auth D], GC [auth HC], GF [auth HF], HA [auth IA], HD [auth ID], IB [auth JB], IE [auth JE], J [auth I], JC [auth KC], JF [auth KF], KA [auth LA], KD [auth LD], LB [auth MB], LE [auth ME], M, MC [auth NC], MF [auth NF], NA [auth OA], ND [auth OD], OB [auth PB], OE [auth PE], P, PC [auth QC], PF [auth QF], QA [auth RA], QD [auth RD], RB [auth SB], RE [auth SE], S, SC [auth TC], SF [auth TF], TA [auth UA], TD [auth UD], UB [auth VB], UE [auth VE], V [auth W], VC [auth WC], VF [auth WF], WA [auth XA], WD [auth XD], XB [auth YB], XE [auth YE], Y [auth Z], YC [auth ZC], ZA [auth AB], ZD [auth AE]	IPR037002	Microviridae F protein superfamily	Homologous Superfamily