9JS6 | pdb_00009js6

cryoEM of antibody complexed with immature Zika virus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G [auth H]Heavy ChainIGHV3 -envelope protein eSAbDab (2026-01-09)
H [auth L]Light ChainIGLV2 Lambdaenvelope protein eSAbDab (2026-01-09)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth B],
E [auth C]
PF00869Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot)Flavivirus glycoprotein, central and dimerisation domainsDomain
A,
C [auth B],
E [auth C]
PF21659Flavivirus envelope glycoprotein E, stem/anchor domain (Flavi_E_stem)Flavivirus envelope glycoprotein E, stem/anchor domainThis entry represents the stem/anchor domain found at the C-terminal of envelope glycoprotein E from Flavivirus. This domain comprises a stem region followed by two transmembrane anchor domains [1-5]. Domain
A,
C [auth B],
E [auth C]
PF02832Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C)Flavivirus glycoprotein, immunoglobulin-like domainDomain
B [auth D],
D [auth E],
F
PF01570Flavivirus polyprotein propeptide (Flavi_propep)Flavivirus polyprotein propeptide- Family
B [auth D],
D [auth E],
F
PF01004Flavivirus envelope glycoprotein M (Flavi_M)Flavivirus envelope glycoprotein M- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
C [auth B],
E [auth C]
Envelope protein E
B [auth D],
D [auth E],
F
Genome polyprotein
G [auth H]antibody heavy chain---
H [auth L]antibody light chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
C [auth B],
E [auth C]
IPR000208RNA-directed RNA polymerase, fingers/palm subdomains, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR014756Immunoglobulin E-setHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR001122Capsid protein C, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR027287Glycoprotein E, immunoglobulin-like domain, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR014412Genome polyprotein, FlavivirusFamily
A,
C [auth B],
E [auth C]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR026490mRNA cap 0/1 methyltransferaseDomain
A,
C [auth B],
E [auth C]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR001650Helicase, C-terminal domain-likeDomain
A,
C [auth B],
E [auth C]
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
A,
C [auth B],
E [auth C]
IPR013755Flaviviral glycoprotein E, central domain, subdomain 1Homologous Superfamily
A,
C [auth B],
E [auth C]
IPR000752Flavivirus non-structural protein NS2ADomain
A,
C [auth B],
E [auth C]
IPR047530RNA-dependent RNA polymerase, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR049486Flavivridae NS3 helicase, C-terminal helical domainDomain
A,
C [auth B],
E [auth C]
IPR046811RNA-directed RNA polymerase, thumb subdomain, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
A,
C [auth B],
E [auth C]
IPR038302Envelope glycoprotein M superfamily, flavivirusHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR000069Envelope glycoprotein M, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR038345Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR038688Flavivirus polyprotein propeptide superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR026470Flavivirus envelope glycoprotein E, Stem/Anchor domainDomain
A,
C [auth B],
E [auth C]
IPR011998Envelope glycoprotein E, central and dimerisation domain, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR037172Flavivirus capsid protein C superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR000404Flavivirus non-structural protein NS4ADomain
A,
C [auth B],
E [auth C]
IPR000487Non-structural protein NS2B, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR001528Flavivirus non-structural protein NS4BDomain
A,
C [auth B],
E [auth C]
IPR001157Non-structural protein NS1, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR013756Flaviviral glycoprotein E, central domain, subdomain 2Homologous Superfamily
A,
C [auth B],
E [auth C]
IPR001850Non-structural protein NS3, peptidase S7, flavivirusDomain
A,
C [auth B],
E [auth C]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C]
IPR002535Flavivirus polyprotein propeptideDomain
A,
C [auth B],
E [auth C]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth D],
D [auth E],
F
IPR000208RNA-directed RNA polymerase, fingers/palm subdomains, flavivirusDomain
B [auth D],
D [auth E],
F
IPR014756Immunoglobulin E-setHomologous Superfamily
B [auth D],
D [auth E],
F
IPR001122Capsid protein C, flavivirusDomain
B [auth D],
D [auth E],
F
IPR027287Glycoprotein E, immunoglobulin-like domain, flavivirusDomain
B [auth D],
D [auth E],
F
IPR014412Genome polyprotein, FlavivirusFamily
B [auth D],
D [auth E],
F
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
B [auth D],
D [auth E],
F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth D],
D [auth E],
F
IPR026490mRNA cap 0/1 methyltransferaseDomain
B [auth D],
D [auth E],
F
IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth D],
D [auth E],
F
IPR001650Helicase, C-terminal domain-likeDomain
B [auth D],
D [auth E],
F
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
B [auth D],
D [auth E],
F
IPR013755Flaviviral glycoprotein E, central domain, subdomain 1Homologous Superfamily
B [auth D],
D [auth E],
F
IPR000752Flavivirus non-structural protein NS2ADomain
B [auth D],
D [auth E],
F
IPR047530RNA-dependent RNA polymerase, flavivirusDomain
B [auth D],
D [auth E],
F
IPR049486Flavivridae NS3 helicase, C-terminal helical domainDomain
B [auth D],
D [auth E],
F
IPR046811RNA-directed RNA polymerase, thumb subdomain, flavivirusDomain
B [auth D],
D [auth E],
F
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B [auth D],
D [auth E],
F
IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
B [auth D],
D [auth E],
F
IPR038302Envelope glycoprotein M superfamily, flavivirusHomologous Superfamily
B [auth D],
D [auth E],
F
IPR000069Envelope glycoprotein M, flavivirusDomain
B [auth D],
D [auth E],
F
IPR038345Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR038688Flavivirus polyprotein propeptide superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR026470Flavivirus envelope glycoprotein E, Stem/Anchor domainDomain
B [auth D],
D [auth E],
F
IPR011998Envelope glycoprotein E, central and dimerisation domain, flavivirusDomain
B [auth D],
D [auth E],
F
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR037172Flavivirus capsid protein C superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR000404Flavivirus non-structural protein NS4ADomain
B [auth D],
D [auth E],
F
IPR000487Non-structural protein NS2B, flavivirusDomain
B [auth D],
D [auth E],
F
IPR001528Flavivirus non-structural protein NS4BDomain
B [auth D],
D [auth E],
F
IPR001157Non-structural protein NS1, flavivirusDomain
B [auth D],
D [auth E],
F
IPR013756Flaviviral glycoprotein E, central domain, subdomain 2Homologous Superfamily
B [auth D],
D [auth E],
F
IPR001850Non-structural protein NS3, peptidase S7, flavivirusDomain
B [auth D],
D [auth E],
F
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth D],
D [auth E],
F
IPR002535Flavivirus polyprotein propeptideDomain
B [auth D],
D [auth E],
F
IPR007094RNA-directed RNA polymerase, catalytic domainDomain