9JRO | pdb_00009jro

Structural Insights into Selective Antagonism of PF04418948 and EP2 Prostaglandin Receptor

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth A]	SCOP2B Superfamily	Cytochromes	8057879	3001526	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth A]	RVT_1	e9jroA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVT_1	ECOD (v295.2)
C [auth N]	RVT_1	e9jroN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: RVT_1	ECOD (v295.2)
B [auth L]	SPRY	e9jroL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: SPRY	ECOD (v295.2)
A [auth H]	DNA_ligase_A_N	e9jroH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_ligase_A_N	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth A]	GFP-like fluorescent chromoprotein,Prostaglandin E2 receptor EP2 subtype,Soluble cytochrome b562,Prostaglandin E2 receptor EP2 subtype,Soluble cytochrome b562	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding prostaglandin E receptor activity prostanoid receptor activity molecular transducer activity G protein-coupled receptor activity binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding prostaglandin E receptor activity prostanoid receptor activity molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity icosanoid receptor activity prostaglandin receptor activity	electron transport chain metabolic process cellular process generation of precursor metabolites and energy cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway electron transport chain metabolic process cellular process generation of precursor metabolites and energy cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction defense response response to stress inflammatory response positive regulation of cytosolic calcium ion concentration regulation of biological quality response to ketone response to lipid response to hormone response to steroid hormone response to chemical response to endogenous stimulus response to progesterone response to oxygen-containing compound response to prostaglandin response to alcohol cellular response to prostaglandin stimulus cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to prostaglandin E stimulus cellular response to chemical stimulus cellular response to alcohol cellular response to lipid response to prostaglandin E cellular response to ketone cellular response to hormone stimulus	cellular anatomical structure extracellular region periplasmic space cell periphery plasma membrane membrane
C [auth N]	Nb	-	-	-
B [auth L]	Light chain of Fab fragment	-	-	-
A [auth H]	Heavy chain of Fab fragment	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth A]	IPR010980	Cytochrome c/b562	Homologous Superfamily
D [auth A]	IPR009155	Cytochrome b562	Family
D [auth A]	IPR000276	G protein-coupled receptor, rhodopsin-like	Family
D [auth A]	IPR008365	Prostanoid receptor	Family
D [auth A]	IPR001923	Prostanoid EP2 receptor	Family
D [auth A]	IPR017452	GPCR, rhodopsin-like, 7TM	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D [auth A]	: P43116	Asthma, Aspirin-Induced asthma, nasal polyps, and aspirin intolerance endometriosis ocular hypertension osteosarcoma physiological sexual disorder breast cancer Ebstein anomaly erectile dysfunction infertility disorder lung carcinoma ovarian cancer rheumatoid arthritis tetralogy of fallot glaucoma Asthma, Aspirin-Induced asthma, nasal polyps, and aspirin intolerance endometriosis ocular hypertension osteosarcoma physiological sexual disorder breast cancer Ebstein anomaly erectile dysfunction infertility disorder lung carcinoma ovarian cancer rheumatoid arthritis tetralogy of fallot glaucoma interstitial cystitis malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.