50S precursor - Erm complex (C-II)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| K [auth P] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| L [auth Q] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| P [auth U] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| G [auth J] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| F [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2B Superfamily | S13-like H2TH domain | 8090704 | 3000053 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8032286 | 3000118 | SCOP2B (2022-06-29) |
| R [auth Z] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| Q [auth Y] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| O [auth T] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| N [auth S] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| M [auth R] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| J [auth N] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| A [auth 0] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth 2] | e9jns21 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: Fer2 | F: | ECOD (20:10:01) | |
| H [auth K] | e9jnsK1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| I [auth L] | e9jnsL1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: MbtH | F: | ECOD (20:10:01) | |
| K [auth P] | e9jnsP1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| L [auth Q] | e9jnsQ1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| P [auth U] | e9jnsU1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: Gelsolin | F: | ECOD (20:10:01) | |
| G [auth J] | e9jnsJ1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: MbtH | F: | ECOD (20:10:01) | |
| F [auth E] | e9jnsE1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| E [auth D] | e9jnsD1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: Galactose-binding domain-like | T: DJ-1_PfpI | F: | ECOD (20:10:01) | |
| D [auth C] | e9jnsC1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: MbtH | F: | ECOD (20:10:01) | |
| R [auth Z] | e9jnsZ1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| Q [auth Y] | e9jnsY1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: MbtH | F: | ECOD (20:10:01) | |
| O [auth T] | e9jnsT1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: Gelsolin | F: | ECOD (20:10:01) | |
| N [auth S] | e9jnsS1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| M [auth R] | e9jnsR1 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) | |
| A [auth 0] | e9jns01 | A: ATPD N-terminal domain-like | X: N-terminal domain of the delta subunit of the F1F0-ATP synthase | H: N-terminal domain of the delta subunit of the F1F0-ATP synthase | T: PKD_channel | F: | ECOD (20:10:01) |
AMR Gene: CARD Annotation CARD Database Homepage
| Chains | Accession | Short Name | Description | Provenance Source (Version) |
|---|---|---|---|---|
| D [auth C] | ARO:3000250 | ErmC | ErmC is a methyltransferase that catalyzes the methylation of A2058 of the 23S ribosomal RNA in two steps. Expression of ErmC is inducible by erythromycin. The leader peptide causes attenuation of the mRNA and stabilizes the structure preventing further translation. When erythromycin is present, it binds the leader peptide causing a change in conformation allowing for the expression of ErmC. | CARD (4.0.1) |
AMR Gene Family: CARD Annotation CARD Database Homepage
| Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
|---|---|---|---|---|---|
| D [auth C] | ARO:3000560 | Erm 23S ribosomal RNA methyltransferase | macrolide antibiotic, lincosamide antibiotic, streptogramin antibiotic, streptogramin A antibiotic, streptogramin B antibiotic | antibiotic target alteration | CARD (4.0.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth K] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| I [auth L] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| K [auth P] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| L [auth Q] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| P [auth U] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| P [auth U] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| G [auth J] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| F [auth E] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| E [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| R [auth Z] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| Q [auth Y] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| O [auth T] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| N [auth S] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| M [auth R] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| J [auth N] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| A [auth 0] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |














