9J8O | pdb_00009j8o

Cryo-EM structure of BAF-Lamin A/C IgF-H1-nucleosome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
MSCOP2B SuperfamilyLamin A/C globular tail domain 8055285 3002064 SCOP2B (2022-06-29)
AA [auth m]SCOP2B SuperfamilyLamin A/C globular tail domain 8055285 3002064 SCOP2B (2022-06-29)
Z [auth l]SCOP2B SuperfamilyBarrier-to-autointegration factor, BAF 8037724 3000540 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyBarrier-to-autointegration factor, BAF 8037724 3000540 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyBarrier-to-autointegration factor, BAF 8037724 3000540 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyBarrier-to-autointegration factor, BAF 8037724 3000540 SCOP2B (2022-06-29)
U [auth g]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
Q [auth c]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
T [auth f]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
P [auth b]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
S [auth e]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
O [auth a]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
AA [auth m],
M
PF00932Lamin Tail Domain (LTD)Lamin Tail DomainThe lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin ...The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies [1].
Domain
C,
G,
Q [auth c],
U [auth g]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
B,
F,
P [auth b],
T [auth f]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
BA [auth n],
N
Histone H1.1
AA [auth m],
M
Lamin-A/C
K,
L,
Y [auth k],
Z [auth l]
Barrier-to-autointegration factor
J,
X [auth j]
DNA (193-MER)---
I,
W [auth i]
DNA (193-MER)---
D,
H,
R [auth d],
V [auth h]
Histone H2B type 1-J
C,
G,
Q [auth c],
U [auth g]
Histone H2A type 1-B/E
B,
F,
P [auth b],
T [auth f]
Histone H4
A,
E,
O [auth a],
S [auth e]
Histone H3.1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
BA [auth n],
N
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BA [auth n],
N
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
BA [auth n],
N
IPR005818Linker histone H1/H5, domain H15Domain
BA [auth n],
N
IPR005819Linker histone H1/H5Family
AA [auth m],
M
IPR018039Intermediate filament protein, conserved siteConserved Site
AA [auth m],
M
IPR036415Lamin tail domain superfamilyHomologous Superfamily
AA [auth m],
M
IPR039008Intermediate filament, rod domainDomain
AA [auth m],
M
IPR001322Lamin tail domainDomain
K,
L,
Y [auth k],
Z [auth l]
IPR051387Barrier-to-autointegration factorFamily
K,
L,
Y [auth k],
Z [auth l]
IPR004122Barrier- to-autointegration factor, BAFFamily
K,
L,
Y [auth k],
Z [auth l]
IPR036617Barrier-to-autointegration factor, BAF superfamilyHomologous Superfamily
D,
H,
R [auth d],
V [auth h]
IPR009072Histone-foldHomologous Superfamily
D,
H,
R [auth d],
V [auth h]
IPR000558Histone H2BFamily
D,
H,
R [auth d],
V [auth h]
IPR007125Core Histone H2A/H2B/H3 domainDomain
D,
H,
R [auth d],
V [auth h]
IPR055333Histone H2B, conserved siteConserved Site
C,
G,
Q [auth c],
U [auth g]
IPR009072Histone-foldHomologous Superfamily
C,
G,
Q [auth c],
U [auth g]
IPR002119Histone H2AFamily
C,
G,
Q [auth c],
U [auth g]
IPR007125Core Histone H2A/H2B/H3 domainDomain
C,
G,
Q [auth c],
U [auth g]
IPR032454Histone H2A, C-terminal domainDomain
C,
G,
Q [auth c],
U [auth g]
IPR032458Histone H2A conserved siteConserved Site
B,
F,
P [auth b],
T [auth f]
IPR009072Histone-foldHomologous Superfamily
B,
F,
P [auth b],
T [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
B,
F,
P [auth b],
T [auth f]
IPR001951Histone H4Family
B,
F,
P [auth b],
T [auth f]
IPR019809Histone H4, conserved siteConserved Site
B,
F,
P [auth b],
T [auth f]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
A,
E,
O [auth a],
S [auth e]
IPR009072Histone-foldHomologous Superfamily
A,
E,
O [auth a],
S [auth e]
IPR007125Core Histone H2A/H2B/H3 domainDomain
A,
E,
O [auth a],
S [auth e]
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
BA [auth n],
N
PharosQ02539
AA [auth m],
M
PharosP02545
K,
L,
Y [auth k],
Z [auth l]
PharosO75531
D,
H,
R [auth d],
V [auth h]
PharosP06899
C,
G,
Q [auth c],
U [auth g]
PharosP04908
B,
F,
P [auth b],
T [auth f]
PharosP62805
A,
E,
O [auth a],
S [auth e]
PharosP68431