9J4T | pdb_00009j4t

Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8055662 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054581 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HLA class I histocompatibility antigen, B alpha chain
Nucleoprotein
SPR epitope specific TCR CLB1 ALPHA---
SPR epitope specific TCR CLB1 BETA---
Beta-2-microglobulin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
IPR003597Immunoglobulin C1-setDomain
IPR010579MHC class I, alpha chain, C-terminalDomain
IPR011161MHC class I-like antigen recognition-likeDomain
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR044344Nucleocapsid (N) protein, C-terminal domain, coronavirusDomain
IPR043505Nucleocapsid protein, betacoronavirusFamily
IPR001218Nucleocapsid protein, coronavirusFamily
IPR037195Nucleocapsid protein, N-terminalHomologous Superfamily
IPR037179Nucleocapsid protein, C-terminalHomologous Superfamily
IPR044345Nucleocapsid (N) protein, N-terminal domain, coronavirusDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR003597Immunoglobulin C1-setDomain
IPR015707Beta-2-MicroglobulinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP01889
PharosP61769