9J48 | pdb_00009j48

GFP bound to 24-mer DARPin-apoferritin model 6c

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
AA [auth N]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
CA [auth O]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
EA [auth P]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
GA [auth Q]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
K [auth F]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
KA [auth S]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
OA [auth V]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
Q [auth I]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
QA [auth W]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
S [auth J]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
W [auth L]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
Y [auth M]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
UA [auth Y]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
SA [auth X]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
MA [auth T]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
M [auth G]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
IA [auth R]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	Ferritin-like	8038756	3001658	SCOP2B (2022-06-29)
B [auth a]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
DA [auth o]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
FA [auth p]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
H [auth d]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
HA [auth q]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
J [auth e]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
JA [auth r]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
L [auth f]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
N [auth g]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
NA [auth t]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
R [auth i]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
T [auth j]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
V [auth k]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
VA [auth y]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
X [auth l]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
Z [auth m]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
TA [auth x]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
RA [auth w]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
PA [auth v]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
P [auth h]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
LA [auth s]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
F [auth c]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
BA [auth n]	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth a]	Beta-Casp	e9j48a1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth b]	Beta-Casp	e9j48b1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
DA [auth o]	Beta-Casp	e9j48o1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
FA [auth p]	Beta-Casp	e9j48p1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
H [auth d]	Beta-Casp	e9j48d1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
HA [auth q]	Beta-Casp	e9j48q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
J [auth e]	Beta-Casp	e9j48e1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
JA [auth r]	Beta-Casp	e9j48r1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
L [auth f]	Beta-Casp	e9j48f1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
N [auth g]	Beta-Casp	e9j48g1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
NA [auth t]	Beta-Casp	e9j48t1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
R [auth i]	Beta-Casp	e9j48i1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
T [auth j]	Beta-Casp	e9j48j1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
V [auth k]	Beta-Casp	e9j48k1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
VA [auth y]	Beta-Casp	e9j48y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
X [auth l]	Beta-Casp	e9j48l1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Z [auth m]	Beta-Casp	e9j48m1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
TA [auth x]	Beta-Casp	e9j48x1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
RA [auth w]	Beta-Casp	e9j48w1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
PA [auth v]	Beta-Casp	e9j48v1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
P [auth h]	Beta-Casp	e9j48h1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
LA [auth s]	Beta-Casp	e9j48s1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth c]	Beta-Casp	e9j48c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
BA [auth n]	Beta-Casp	e9j48n1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	Designed ankyrin repeat proteins,Ferritin heavy chain, N-terminally processed	molecular sequestering activity iron ion sequestering activity metal ion sequestering activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity molecular sequestering activity iron ion sequestering activity metal ion sequestering activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity identical protein binding protein binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport response to stimulus immune response immune system process negative regulation of ferroptosis regulation of biological process regulation of cellular process negative regulation of programmed cell death biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of cellular process cellular process regulation of ferroptosis ferroptosis programmed cell death negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation fibroblast proliferation regulation of fibroblast proliferation negative regulation of fibroblast proliferation	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen intracellular vesicle extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle vacuole autophagosome tertiary granule lumen tertiary granule autolysosome lytic vacuole secondary lysosome lysosome ferritin complex protein-containing complex nucleus
B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], FA [auth p], H [auth d], HA [auth q], J [auth e], JA [auth r], L [auth f], LA [auth s], N [auth g], NA [auth t], P [auth h], PA [auth v], R [auth i], RA [auth w], T [auth j], TA [auth x], V [auth k], VA [auth y], X [auth l], Z [auth m]	Green fluorescent protein	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	IPR009040	Ferritin-like diiron domain	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	IPR012347	Ferritin-like	Homologous Superfamily
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	IPR008331	Ferritin/DPS domain	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	IPR001519	Ferritin	Family
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	IPR014034	Ferritin, conserved site	Conserved Site
B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], FA [auth p], H [auth d], HA [auth q], J [auth e], JA [auth r], L [auth f], LA [auth s], N [auth g], NA [auth t], P [auth h], PA [auth v], R [auth i], RA [auth w], T [auth j], TA [auth x], V [auth k], VA [auth y], X [auth l], Z [auth m]	IPR000786	Green fluorescent protein, GFP	Family
B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], FA [auth p], H [auth d], HA [auth q], J [auth e], JA [auth r], L [auth f], LA [auth s], N [auth g], NA [auth t], P [auth h], PA [auth v], R [auth i], RA [auth w], T [auth j], TA [auth x], V [auth k], VA [auth y], X [auth l], Z [auth m]	IPR011584	Green fluorescent protein-related	Family
B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], FA [auth p], H [auth d], HA [auth q], J [auth e], JA [auth r], L [auth f], LA [auth s], N [auth g], NA [auth t], P [auth h], PA [auth v], R [auth i], RA [auth w], T [auth j], TA [auth x], V [auth k], VA [auth y], X [auth l], Z [auth m]	IPR009017	Green fluorescent protein	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	: P02794	hemochromatosis type 5 malignant glioma malignant mesothelioma melancholia contact dermatitis Iron Overload mixed glioma keloid endogenous depression neurodegenerative disease non-small cell lung carcinoma asthma precancerous condition subependymal giant cell astrocytoma glioma hemochromatosis type 5 malignant glioma malignant mesothelioma melancholia contact dermatitis Iron Overload mixed glioma keloid endogenous depression neurodegenerative disease non-small cell lung carcinoma asthma precancerous condition subependymal giant cell astrocytoma glioma lung cancer ovarian cancer atypical teratoid rhabdoid tumor ulcerative colitis dermatomyositis lymphoplasmacytic lymphoma medulloblastoma neurotic disorder plasma cell myeloma psoriasis depressive disorder hepatocellular carcinoma large cell medulloblastoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.