9IZ9 | pdb_00009iz9

VLP structure of Chikungunya virus complexed with C37 Fab, 2f block.

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth I],
L [auth J],
M [auth K],
N [auth L]		PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
G [auth E],
H [auth F],
I [auth G],
J [auth H]		PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
C [auth A],
D [auth B],
E [auth C],
F [auth D]		PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
K [auth I],
L [auth J],
M [auth K],
N [auth L]		CHIKV capsid protein
G [auth E],
H [auth F],
I [auth G],
J [auth H]		Structural polyprotein
C [auth A],
D [auth B],
E [auth C],
F [auth D]		CHIKV E1
B [auth T],
P [auth R],
R [auth P],
T [auth N]		C37 Fab, Light chain---
A [auth S],
O [auth Q],
Q [auth O],
S [auth M]		C37 Fab, Heavy chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR002533Alphavirus E3 spike glycoproteinDomain
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR014756Immunoglobulin E-setHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR009003Peptidase S1, PA clanHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR000936Alphavirus E2 glycoproteinFamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR000930Peptidase S3, togavirinDomain
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR002548Alphavirus E1 glycoproteinDomain
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
K [auth I],
L [auth J],
M [auth K],
N [auth L]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR002533Alphavirus E3 spike glycoproteinDomain
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR014756Immunoglobulin E-setHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR009003Peptidase S1, PA clanHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR000936Alphavirus E2 glycoproteinFamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR000930Peptidase S3, togavirinDomain
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR002548Alphavirus E1 glycoproteinDomain
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
G [auth E],
H [auth F],
I [auth G],
J [auth H]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR000936Alphavirus E2 glycoproteinFamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR000930Peptidase S3, togavirinDomain
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR002548Alphavirus E1 glycoproteinDomain
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth A],
D [auth B],
E [auth C],
F [auth D]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily